Difference between revisions of "2008 Winter Project Week Tractography"

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'''Link to [[ProjectWeek200706:ContrastingTractographyMeasures|DTI Validation Project Management Page]]'''
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== Tractography Validation Beadeker ==
 
== Tractography Validation Beadeker ==
  
**9:00am:  Guido Gerig, Overview of Project goals and progress to date including Santa Fe meeting [http://www.na-mic.org/Wiki/index.php/Projects/Diffusion/Contrasting_Tractography_Measures tractography methods see this page for background]
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**9:00am:  Guido Gerig, Overview of Project goals and progress to date including Santa Fe meeting [http://www.na-mic.org/Wiki/index.php/Projects/Diffusion/Contrasting_Tractography_Measures | Link to tractography algorithms]
**9:15am: Randy Gollub, Morphometry BIRN DTI acquisition and analysis update
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**9:15am: Randy Gollub, Morphometry BIRN DTI acquisition and analysis update [[Media:NA-MIC.2008.AHM.mBIRN.ppt |Morphometry BIRN DTI calibration]]
**9:25am: Randy Gollub, MIND Reliability dataset goals  
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**9:25am: Randy Gollub, MIND Reliability dataset goals [[Media:NA-MIC.2008.AHM.MINDintro.ppt‎ |Impact of using MIND data for this project]]
  
 
== Algorithm specific presentations ==
 
== Algorithm specific presentations ==
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**9:35  Sonia Pujol (BWH) Streamline Tractography in Slicer 2.7 using ROI and Whole Brain Seeding
 
**9:35  Sonia Pujol (BWH) Streamline Tractography in Slicer 2.7 using ROI and Whole Brain Seeding
 
**9:45  Sylvain Gouttard (Utah) FiberViewer
 
**9:45  Sylvain Gouttard (Utah) FiberViewer
**9:55  Tri Ngo (MIT/BWH) Stochastic Tractography
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**9:55  Casey Goodlett (Utah) DTI Atlas
**10:05  John Melonakos (Georgia Tech) [[media:NAMICTractographyConferenceGeorgiaTech.ppt|Geodesic Tractography Segmentation]]
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**10:05  John Melonakos (Georgia Tech) Geodesic Tractography Segmentation ([[media:AHM2008TractographyConferenceGeorgiaTech.ppt|slides]])
**10:15  Vince Magnotta (UIowa) GTract
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**10:15  Tri Ngo (MIT/BWH) Stochastic Tractography ([[media:STpresentationpack.zip|slides]])
**10:25  Ross Whitaker/Tom Fletcher (Utah) Volumetric Connectivity
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**10:25  Vince Magnotta (UIowa) GTract
 
'''10:35am: Coffee break'''
 
'''10:35am: Coffee break'''
**11:00  Casey Goodlett (Utah) DTI Atlas
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**11:00  Tom Fletcher (Utah) Volumetric Connectivity ([[media:VolumetricPathwayResults_NAMIC_AHM2008.ppt|slides]])
 
**11:10  Sonia Pujol (BWH)  Cross algorithm summary statistics
 
**11:10  Sonia Pujol (BWH)  Cross algorithm summary statistics
  
 
== Discussion, future planning ==
 
== Discussion, future planning ==
  
**11:25 Ross Whitaker to kick-off discussion of Tractography results with summarizing ideas
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**11:25 CF Westin to kick-off discussion of Tractography results with summarizing ideas. [[2008_Winter_Project_Week_Tractography_Meeting_Notes|Meeting Notes]]
 
'''12:00pm: Lunch'''
 
'''12:00pm: Lunch'''
**1:00- 1:30pm Presentation of current status of Slicer 3 DTI infrastructure (Alex Yarmarkovich) [http://www.na-mic.org/Wiki/index.php/Slicer3:DTMRI Slicer3 DTI status]  
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**1:00- 1:20pm Presentation of current status of Slicer 3 DTI infrastructure (Alex Yarmarkovich)[http://www.na-mic.org/Wiki/index.php/Slicer3:DTMRI Slicer3 DTI status]
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**1:20-1:30pm  Dan Marcus to gather requirements to post this dataset for consideration of whether this is an XNATophilic project 
 
**1:30- 3:00pm Continue discussion of Tractography results with focus on:
 
**1:30- 3:00pm Continue discussion of Tractography results with focus on:
 
***Data formats and coordinate system requirements/guidelines/recommendations
 
***Data formats and coordinate system requirements/guidelines/recommendations
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***Outcome metrics and how to best frame scientific questions for this project, steps towards manuscript preparation, milestones for spring 2008 and for Programming Week in June
 
***Outcome metrics and how to best frame scientific questions for this project, steps towards manuscript preparation, milestones for spring 2008 and for Programming Week in June
 
'''3pm: coffee break'''
 
'''3pm: coffee break'''
**3:15pm  Dan Marcus to lead discussion of effort required to post this dataset and results on XNAT Central or XNAT NAMIC or where?
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*3-4PM Batchmake break-out session
 
**4:00pm  Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development, keeping in mind the work already done by Alex (see 1 PM talk).
 
**4:00pm  Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development, keeping in mind the work already done by Alex (see 1 PM talk).
 
***Identify and agree upon essential processing steps (pipeline) necessary for clinical DTI studies
 
***Identify and agree upon essential processing steps (pipeline) necessary for clinical DTI studies
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***Integrate with other on-going efforts
 
***Integrate with other on-going efforts
  
 
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== Meeting Notes ==
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Notes of Tractography Meeting Jan 9, 2008:  [[2008_Winter_Project_Week_Tractography_Meeting_Notes| Meeting Notes]]
  
  
 
Back to [[AHM_2008]], [[Events]]
 
Back to [[AHM_2008]], [[Events]]

Latest revision as of 15:08, 11 February 2008

Home < 2008 Winter Project Week Tractography

Link to DTI Validation Project Management Page

Tractography Validation Beadeker

Algorithm specific presentations

    • 9:35 Sonia Pujol (BWH) Streamline Tractography in Slicer 2.7 using ROI and Whole Brain Seeding
    • 9:45 Sylvain Gouttard (Utah) FiberViewer
    • 9:55 Casey Goodlett (Utah) DTI Atlas
    • 10:05 John Melonakos (Georgia Tech) Geodesic Tractography Segmentation (slides)
    • 10:15 Tri Ngo (MIT/BWH) Stochastic Tractography (slides)
    • 10:25 Vince Magnotta (UIowa) GTract

10:35am: Coffee break

    • 11:00 Tom Fletcher (Utah) Volumetric Connectivity (slides)
    • 11:10 Sonia Pujol (BWH) Cross algorithm summary statistics

Discussion, future planning

    • 11:25 CF Westin to kick-off discussion of Tractography results with summarizing ideas. Meeting Notes

12:00pm: Lunch

    • 1:00- 1:20pm Presentation of current status of Slicer 3 DTI infrastructure (Alex Yarmarkovich)Slicer3 DTI status
    • 1:20-1:30pm Dan Marcus to gather requirements to post this dataset for consideration of whether this is an XNATophilic project
    • 1:30- 3:00pm Continue discussion of Tractography results with focus on:
      • Data formats and coordinate system requirements/guidelines/recommendations
      • Quality control methods and implementation
      • ROIs: what works, what doesn't, what to do?
      • Registration &/or resampling to support visit 1- visit 2 analysis and group analysis
      • Freesurfer to B0 transform for white matter mask
      • Quantification of registration error and its propagation forward and impact on final results
      • Plans for data sharing curation and timeline (integration with XNAT project, should we make plans for a NAMIC sponsored MICCAI event: Tractography Grand Challenge e.g. the one done last year for segmentation? See http://mbi.dkfz-heidelberg.de/grand-challenge2007/)
      • Outcome metrics and how to best frame scientific questions for this project, steps towards manuscript preparation, milestones for spring 2008 and for Programming Week in June

3pm: coffee break

  • 3-4PM Batchmake break-out session
    • 4:00pm Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development, keeping in mind the work already done by Alex (see 1 PM talk).
      • Identify and agree upon essential processing steps (pipeline) necessary for clinical DTI studies
      • Identify Core-1 modules and methods that are a) recently integrated, b) ready to be integrated, c) in development
      • Integrate with other on-going efforts

Meeting Notes

Notes of Tractography Meeting Jan 9, 2008: Meeting Notes


Back to AHM_2008, Events