Difference between revisions of "2009 Summer Project Week DWI / DTI QC and Prepare Tool: DTIPrep"
From NAMIC Wiki
| Line 30: | Line 30: | ||
<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
| − | The tool allows a "protocol" based execution via parameter files. The parameter file contains all the settings/preferences/options and can be created using the tool's GUI. This tool | + | The tool allows a "protocol" based execution via parameter files. The parameter file contains all the settings/preferences/options and can be created using the tool's GUI. This tool performs automated quality control, correct data if possible, possibly reject parts of the data and provide a reporting facility. |
Our plan for the project week is to: | Our plan for the project week is to: | ||
Revision as of 05:22, 11 June 2009
Home < 2009 Summer Project Week DWI < DTI QC and Prepare Tool: DTIPrep
Key Investigators
- UNC: Zhexing Liu, Heather Cody Hazlett, Martin Styner
- Utah: Casey Goodlett, Guido Gerig, Tom Fletcher, Ran Tao
Objective
We are developing a GUI/command line tool for DWI QC and DTI preparing.
- Both a GUI and command line tool
- "Study-specific Protocol" based
- Handles NRRD and MINC2 formats
- Image/diffusion information check
- Padding/Cropping of data
- Slice-wise, interlace-wise and gradient-wise intensity and motion check
- Motion/Eddy current correction
- DTI data, as well as FA/MD
Approach, Plan
The tool allows a "protocol" based execution via parameter files. The parameter file contains all the settings/preferences/options and can be created using the tool's GUI. This tool performs automated quality control, correct data if possible, possibly reject parts of the data and provide a reporting facility.
Our plan for the project week is to:
- Add MINC2 support
- Tune intergrations with other tools
Progress
