Difference between revisions of "2009 Summer Project Week DWI / DTI QC and Prepare Tool: DTIPrep"
From NAMIC Wiki
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** Slice-wise, interlace-wise and gradient-wise intensity and motion check | ** Slice-wise, interlace-wise and gradient-wise intensity and motion check | ||
** Motion/Eddy current correction | ** Motion/Eddy current correction | ||
| − | ** DTI | + | ** DTI computing |
Revision as of 05:44, 11 June 2009
Home < 2009 Summer Project Week DWI < DTI QC and Prepare Tool: DTIPrep
Key Investigators
- UNC: Zhexing Liu, Heather Cody Hazlett, Martin Styner
- Utah: Casey Goodlett, Guido Gerig, Tom Fletcher, Ran Tao
Objective
We are developing a GUI/command line tool for DWI/DTI QC and preparation.
- Both a GUI and command line tool
- "Study-specific Protocol" based
- Handles NRRD and MINC2 formats
- Image/diffusion information check
- Padding/Cropping of data
- Slice-wise, interlace-wise and gradient-wise intensity and motion check
- Motion/Eddy current correction
- DTI computing
Approach, Plan
The tool allows a "protocol" based execution via parameter files. The parameter file contains all the settings/preferences/options and can be created using the tool's GUI. This tool performs automated quality control, correct data if possible, possibly reject parts of the data and provide a reporting facility.
Our plan for the project week is to:
- Add MINC2 support
- Tune intergrations with other tools
Progress
