Difference between revisions of "2009 Summer Project Week Multimodal SPL Brain Atlas"
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__NOTOC__ | __NOTOC__ | ||
<gallery> | <gallery> | ||
| − | Image:Thalamus.png | + | Image:PW2009-v3.png|[[2009_Summer_Project_Week#Projects|Projects List]] |
| + | Image:Thalamus.png|Thalamus | ||
</gallery> | </gallery> | ||
==Key Investigators== | ==Key Investigators== | ||
| − | * BWH: Ion-Florin Talos | + | * BWH: Ion-Florin Talos, Michael Halle, Wendy Plesniak |
| − | * | + | * GE: Jim Miller |
| − | |||
| − | |||
<div style="margin: 20px;"> | <div style="margin: 20px;"> | ||
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<h3>Objective</h3> | <h3>Objective</h3> | ||
| − | To | + | To explore ways of linking the image data of the SPL multi-modal brain atlas (label maps, 3D-models) with ontological information on brain morphology and function |
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<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
| − | + | ||
| + | * continue work on XML-based intermediate data representation that supports anatomical hierarchies and can describe arbitrary overlapping image regions | ||
| + | * application integration of the new XML-based data representation (3D-Slicer) | ||
| + | * discussion of automated testing for atlas segmentation | ||
| + | * discussion of integration of FMA with atlas | ||
| + | </div> | ||
| + | |||
| + | <div style="width: 40%; float: left;"> | ||
| + | <h3>Progress</h3> | ||
| + | |||
| + | * met with interested users from the larger community to discuss project concepts and possible use cases | ||
| + | * discussed collaboraton opportunities | ||
| + | * will have followup engineering meeting with GE next week | ||
| + | </div> | ||
| + | </div> | ||
| + | <div style="width: 97%; float: left;"> | ||
| + | |||
| + | ==References== | ||
| + | 1. Talos IF, Rubin DL, Halle M, Musen MA, Kikinis R. A prototype symbolic model of canonical functional neuroanatomy of the motor system. J Biomed Inform. 2008 Apr;41(2):251-263. | ||
| + | |||
| + | 2. Rubin DL, Talos IF, Halle M, Musen MA, Kikinis R. Computational neuroanatomy: ontology-based representation of neural components and connectivity. BMC Bioinformatics 2009; 10(Suppl 2):S3. | ||
| + | </div> | ||
Latest revision as of 12:57, 26 June 2009
Home < 2009 Summer Project Week Multimodal SPL Brain Atlas
Thalamus
Key Investigators
- BWH: Ion-Florin Talos, Michael Halle, Wendy Plesniak
- GE: Jim Miller
Objective
To explore ways of linking the image data of the SPL multi-modal brain atlas (label maps, 3D-models) with ontological information on brain morphology and function
Approach, Plan
- continue work on XML-based intermediate data representation that supports anatomical hierarchies and can describe arbitrary overlapping image regions
- application integration of the new XML-based data representation (3D-Slicer)
- discussion of automated testing for atlas segmentation
- discussion of integration of FMA with atlas
Progress
- met with interested users from the larger community to discuss project concepts and possible use cases
- discussed collaboraton opportunities
- will have followup engineering meeting with GE next week
References
1. Talos IF, Rubin DL, Halle M, Musen MA, Kikinis R. A prototype symbolic model of canonical functional neuroanatomy of the motor system. J Biomed Inform. 2008 Apr;41(2):251-263.
2. Rubin DL, Talos IF, Halle M, Musen MA, Kikinis R. Computational neuroanatomy: ontology-based representation of neural components and connectivity. BMC Bioinformatics 2009; 10(Suppl 2):S3.
