Difference between revisions of "2009 Summer Project Week Multimodal SPL Brain Atlas"
From NAMIC Wiki
| Line 21: | Line 21: | ||
<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
| − | * continue work on XML-based intermediate data representation that supports anatomical hierarchies and can describe arbitrary overlapping image regions | + | * continue work on XML-based intermediate data representation that supports anatomical hierarchies and can describe arbitrary overlapping image regions |
* application integration of the new XML-based data representation (3D-Slicer) | * application integration of the new XML-based data representation (3D-Slicer) | ||
| + | * discussion of automated testing for atlas segmentation | ||
| + | * discussion of integration of FMA with atlas | ||
</div> | </div> | ||
Revision as of 16:54, 19 June 2009
Home < 2009 Summer Project Week Multimodal SPL Brain Atlas
Key Investigators
- BWH: Ion-Florin Talos, Michael Halle, Wendy Plesniak
- GE: Jim Miller
Objective
To explore ways of linking the image data of the SPL multi-modal brain atlas (label maps, 3D-models) with ontological information on brain morphology and function
Approach, Plan
- continue work on XML-based intermediate data representation that supports anatomical hierarchies and can describe arbitrary overlapping image regions
- application integration of the new XML-based data representation (3D-Slicer)
- discussion of automated testing for atlas segmentation
- discussion of integration of FMA with atlas
Progress
References
1. Talos IF, Rubin DL, Halle M, Musen MA, Kikinis R. A prototype symbolic model of canonical functional neuroanatomy of the motor system. J Biomed Inform. 2008 Apr;41(2):251-263. 2. Rubin DL, Talos IF, Halle M, Musen MA, Kikinis R. Computational neuroanatomy: ontology-based representation of neural components and connectivity. BMC Bioinformatics 2009; 10(Suppl 2):S3.
