Difference between revisions of "2012 Progress Report Science Wiki Version"

From NAMIC Wiki
Jump to: navigation, search
(40 intermediate revisions by 4 users not shown)
Line 15: Line 15:
 
| style="background:#fff6a6; color:black"|Update Figure 1-1. Geo-anatomical Map of NA-MIC Collaborations, Recent changes and Center (administrative) highlights
 
| style="background:#fff6a6; color:black"|Update Figure 1-1. Geo-anatomical Map of NA-MIC Collaborations, Recent changes and Center (administrative) highlights
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|2. HIGHLIGHTS  
+
| style="background:#ffffdd; color:black" align="center"|2. [[2012_Progress_Report_HIGHLIGHTS | HIGHLIGHTS]]
 
| style="background:#c4f4af; color:black"|Will Schroeder, Kitware
 
| style="background:#c4f4af; color:black"|Will Schroeder, Kitware
| style="background:#fff6a6; color:black"|2.1 Algorithms, 2.2 Engineering, 2.3 NA-MIC Kit.
+
| style="background:#b4e4d4; color:black"|2.1 Algorithms, 2.2 Engineering, 2.3 NA-MIC Kit.
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/23/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|3. IMPACT AND VALUE TO BIOCOMPUTING
+
| style="background:#ffffdd; color:black" align="center"|3. [[2012_Progress_Report_IMPACT | IMPACT AND VALUE TO BIOCOMPUTING]]
 
| style="background:#c4f4af; color:black"|Jim Miller, GE
 
| style="background:#c4f4af; color:black"|Jim Miller, GE
| style="background:#fff6a6; color:black"|3.1 Impact within the Center, 3.2 Impact within NIH-Funded Research, 3.3 National and International Impact
+
| style="background:#b4e4d4; color:black"|3.1 Impact within the Center, 3.2 Impact within NIH-Funded Research, 3.3 National and International Impact
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012
 
|-
 
|-
 
| style="background:#ffffdd; color:black" align="center"|4. RESEARCH PROGRESS SUMMARIES
 
| style="background:#ffffdd; color:black" align="center"|4. RESEARCH PROGRESS SUMMARIES
Line 31: Line 33:
 
| style="background:#fff6a6; color:black"|  
 
| style="background:#fff6a6; color:black"|  
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|4.1.1 Atrial Fibrillation
+
| style="background:#ffffdd; color:black" align="center"|4.1.1 [[2012_Progress_Report_DBP Atrial_Fibrillation | Atrial Fibrillation]]
 
| style="background:#c4f4af; color:black"|Rob MacLeod, Utah
 
| style="background:#c4f4af; color:black"|Rob MacLeod, Utah
| style="background:#fff6a6; color:black"|A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
+
| style="background:#b4ebd4; color:black"|A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|4.1.2 Huntington's Disease
+
| style="background:#ffffdd; color:black" align="center"|4.1.2 [[2012_Progress_Report_DBP Huntington's Disease | Huntington's Disease]]
 
| style="background:#c4f4af; color:black"|Hans Johnson, Iowa
 
| style="background:#c4f4af; color:black"|Hans Johnson, Iowa
| style="background:#fff6a6; color:black"|A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
+
| style="background:#b4e4d4; color:black"|A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/18/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|4.1.3 Adaptive Radiotherapy for Head and Neck Cancer
+
| style="background:#ffffdd; color:black" align="center"|4.1.3 [[2012_Progress_Report_DBP Adaptive Radiotherapy | Adaptive Radiotherapy for Head and Neck Cancer]]
 
| style="background:#c4f4af; color:black"|Gregory C. Sharp, MGH
 
| style="background:#c4f4af; color:black"|Gregory C. Sharp, MGH
| style="background:#fff6a6; color:black"|A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
+
| style="background:#b4e4d4; color:black"|A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/17/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|4.1.4 Traumatic Brain Injury
+
| style="background:#ffffdd; color:black" align="center"|4.1.4 [[2012_Progress_Report_DBP_TBI | Traumatic Brain Injury]]
 
| style="background:#c4f4af; color:black"|Jack Van Horn, UCLA
 
| style="background:#c4f4af; color:black"|Jack Van Horn, UCLA
| style="background:#fff6a6; color:black"|A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
+
| style="background:#b4e4d4; color:black"|A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/2/2012
 
|-
 
|-
 
| style="background:#ffffdd; color:black" align="center"|5. COMPUTER SCIENCE CORE
 
| style="background:#ffffdd; color:black" align="center"|5. COMPUTER SCIENCE CORE
Line 53: Line 59:
 
| style="background:#ffffdd; color:black" align="center"|5.1 Algorithms
 
| style="background:#ffffdd; color:black" align="center"|5.1 Algorithms
 
| style="background:#c4f4af; color:black"|Polina Golland, Guido Gerig, Allen Tannenbaum, Martin Styner
 
| style="background:#c4f4af; color:black"|Polina Golland, Guido Gerig, Allen Tannenbaum, Martin Styner
| style="background:#fff6a6; color:black"|5.1.1 Statistical Models of Anatomy and Pathology, Polina Golland<br>A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC<br>
+
| style="background:#b4e4d4; color:black"|5.1.1 Statistical Models of Anatomy and Pathology, Polina Golland<br>A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
5.1.2. Geometric Correspondence, Guido Gerig<br>A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC<br>
+
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012<br>
5.1.3. User Interactive Segmentation, Allen Tannenbaum<br>A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC<br>
 
5.1.4. Longitudinal and Time Series Analysis, Martin Styner<br>A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
 
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|5.2 Engineering
+
| style="background:#ffffdd; color:black" align="center"|
 +
| style="background:#c4f4af; color:black"|
 +
| style="background:#b4e4d4; color:black"|5.1.2. Geometric Correspondence, Guido Gerig<br>A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC<br>
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012<br>
 +
|-
 +
| style="background:#ffffdd; color:black" align="center"|
 +
| style="background:#c4f4af; color:black"|
 +
| style="background:#b4e4d4; color:black"|5.1.3. User Interactive Segmentation, Allen Tannenbaum<br>A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012<br><br>
 +
|-
 +
| style="background:#ffffdd; color:black" align="center"|
 +
| style="background:#c4f4af; color:black"|
 +
| style="background:#b4e4d4; color:black"|5.1.4. Longitudinal and Time Series Analysis, Martin Styner<br>A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012<br>
 +
|-
 +
| style="background:#ffffdd; color:black" align="center"|5.2  
 
| style="background:#c4f4af; color:black"|Will Schroeder, Steven Aylward, Steve Pieper, Jim Miller
 
| style="background:#c4f4af; color:black"|Will Schroeder, Steven Aylward, Steve Pieper, Jim Miller
| style="background:#c4f4af; color:black"|5.2.1. End-user Platform, Steve Pieper<br>5.2.2. Computational Platform, Jim Miller<br>5.2.3. Data Management Platform, ?<br>5.2.4.Software Process, Steven R. Aylward<br>
+
| style="background:#b4e4d4; color:black"|5.2.1. [[2012_Progress_Report_Science_Wiki_Version_Engineering | End-user Platform, Steve Pieper]]
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/2/2012
 +
|-
 +
| style="background:#ffffdd; color:black" align="center"|
 +
| style="background:#c4f4af; color:black"|
 +
| style="background:#b4e4d4; color:black" align="center"|5.2.2. [[2012_Progress_Report_Science_Wiki_Version_Engineering | Computational Platform, Jim Miller]]
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012
 +
|-
 +
 
 +
| style="background:#ffffdd; color:black" align="center"|
 +
| style="background:#c4f4af; color:black"|
 +
| style="background:#b4e4d4; color:black" align="center"|5.2.3. [[2012_Progress_Report_Science_Wiki_Version_Engineering | Data Management Platform, Dan Marcus]]
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|5.3 NA-MIC Kit
+
| style="background:#ffffdd; color:black" align="center"|
 +
| style="background:#c4f4af; color:black"|
 +
| style="background:#b4e4d4; color:black" align="center"|5.2.4.[[2012_Progress_Report_Science_Wiki_Version_Engineering | Software Process, Stephen R. Aylward ]]
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012
 +
|-
 +
| style="background:#ffffdd; color:black" align="center"|5.3 [[2012_Progress_Report_Science_Wiki_Version_Engineering | NA-MIC Kit]]
 
| style="background:#c4f4af; color:black"|Will Schroeder, Steven Aylward, Steve Pieper, Jim Miller
 
| style="background:#c4f4af; color:black"|Will Schroeder, Steven Aylward, Steve Pieper, Jim Miller
| style="background:#c4f4af; color:black"|5.3.1. Expansion<br>5.3.2. Release<br>
+
| style="background:#b4e4d4; color:black"|5.3.1. [[2012_Progress_Report_Science_Wiki_Version_Engineering | Expansion<br>5.3.2. Release<br>]]
 
+
| style="background:#b4e4d4; color:black"|Submitted on 4/21/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|6. ARRA SUPPLEMENT
+
| style="background:#ffffdd; color:black" align="center"|6. [[2012_Progress_Report_ARRA_Supplement| ARRA SUPPLEMENT]]
| style="background:#c4f4af; color:black"|Steve Aylward, Steve Pieper
+
| style="background:#c4f4af; color:black"|Steve Aylward
| style="background:#fff6a6; color:black"|6.1 Summary of Funded Activity<br>
+
| style="background:#b4e4d4; color:black"|6.1 Summary of Funded Activity
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/2/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|7. OUTREACH
+
| style="background:#ffffdd; color:black" align="center"|7. [[2012_Progress_Report_Outreach| OUTREACH]]
 
| style="background:#c4f4af; color:black"|Sonia Pujol
 
| style="background:#c4f4af; color:black"|Sonia Pujol
| style="background:#fff6a6; color:black"|7.1 Summary of Outreach Activities<br>
+
| style="background:#b4e4d4; color:black"|7.1 Summary of Outreach Activities<br>
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/13/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|7. NA-MIC PUBLICATIONS
+
| style="background:#ffffdd; color:black" align="center"|8. NA-MIC PUBLICATIONS  
 
| style="background:#c4f4af; color:black"|Marianna  
 
| style="background:#c4f4af; color:black"|Marianna  
| style="background:#fff6a6; color:black"|<br>
+
| style="background:#fff6a6; color:black"|8.1 Papers that Acknowledge NA-MIC,  8.2. Conference Reports  [[2012_Progress_Report#Dissemination|Go to All Papers List]]<br>
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|8. External Advisory Board (EAB) Report
+
| style="background:#ffffdd; color:black" align="center"|9. External Advisory Board (EAB) Report
 
| style="background:#c4f4af; color:black"|Bill Lorensen
 
| style="background:#c4f4af; color:black"|Bill Lorensen
 
| style="background:#fff6a6; color:black"|
 
| style="background:#fff6a6; color:black"|

Revision as of 20:08, 23 April 2012

Home < 2012 Progress Report Science Wiki Version

Back to NAMIC_Annual_Reports
Back to NAMIC_2012_Progress_Report

This is where the outline for the 2012 scientific report for NA-MIC goes in. Ann will provide this outline by 4/1.

Assignments: Short version

Reporting Interval: 7/1/2011- 6/30/2012

Task Owner Title, comments
1. INTRODUCTION Ron Update Figure 1-1. Geo-anatomical Map of NA-MIC Collaborations, Recent changes and Center (administrative) highlights
2. HIGHLIGHTS Will Schroeder, Kitware 2.1 Algorithms, 2.2 Engineering, 2.3 NA-MIC Kit. Submitted on 4/23/2012
3. IMPACT AND VALUE TO BIOCOMPUTING Jim Miller, GE 3.1 Impact within the Center, 3.2 Impact within NIH-Funded Research, 3.3 National and International Impact Submitted on 4/20/2012
4. RESEARCH PROGRESS SUMMARIES
4.1 DRIVING BIOLOGICAL PROJECTS DBP PIs
4.1.1 Atrial Fibrillation Rob MacLeod, Utah A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC Submitted on 4/20/2012
4.1.2 Huntington's Disease Hans Johnson, Iowa A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC Submitted on 4/18/2012
4.1.3 Adaptive Radiotherapy for Head and Neck Cancer Gregory C. Sharp, MGH A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC Submitted on 4/17/2012
4.1.4 Traumatic Brain Injury Jack Van Horn, UCLA A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC Submitted on 4/2/2012
5. COMPUTER SCIENCE CORE Ross Whitaker Brief Introduction: Algorithms, Engineering, NA-MIC Kit
5.1 Algorithms Polina Golland, Guido Gerig, Allen Tannenbaum, Martin Styner 5.1.1 Statistical Models of Anatomy and Pathology, Polina Golland
A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
Submitted on 4/20/2012
5.1.2. Geometric Correspondence, Guido Gerig
A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
Submitted on 4/20/2012
5.1.3. User Interactive Segmentation, Allen Tannenbaum
A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
Submitted on 4/20/2012

5.1.4. Longitudinal and Time Series Analysis, Martin Styner
A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
Submitted on 4/20/2012
5.2 Will Schroeder, Steven Aylward, Steve Pieper, Jim Miller 5.2.1. End-user Platform, Steve Pieper Submitted on 4/2/2012
5.2.2. Computational Platform, Jim Miller Submitted on 4/20/2012
5.2.3. Data Management Platform, Dan Marcus Submitted on 4/20/2012
5.2.4. Software Process, Stephen R. Aylward Submitted on 4/20/2012
5.3 NA-MIC Kit Will Schroeder, Steven Aylward, Steve Pieper, Jim Miller 5.3.1. Expansion
5.3.2. Release
Submitted on 4/21/2012
6. ARRA SUPPLEMENT Steve Aylward 6.1 Summary of Funded Activity Submitted on 4/2/2012
7. OUTREACH Sonia Pujol 7.1 Summary of Outreach Activities
Submitted on 4/13/2012
8. NA-MIC PUBLICATIONS Marianna 8.1 Papers that Acknowledge NA-MIC, 8.2. Conference Reports Go to All Papers List
9. External Advisory Board (EAB) Report Bill Lorensen