Difference between revisions of "2014 Project Week:WMQLExtension"

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* create Slicer 4 extension
 
* create Slicer 4 extension
 
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<h3>Progress</h3>
 
<h3>Progress</h3>
* The major technical hurdle that remains unresolved is the code's dependency on numpy 1.7. A long-term solution would be to update Slicer to work with numpy 1.7.  
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* The major technical hurdle that remains to be solved before creating a Slicer extension is the code's dependency on numpy 1.7. A long-term solution would be to update Slicer to work with numpy 1.7.  
 
* In the meantime, we have a working prototype for a Slicer module that works if numpy 1.7 is manually installed. The source code is available in a github repository: https://github.com/llcmgh/slicer_tract_querier
 
* In the meantime, we have a working prototype for a Slicer module that works if numpy 1.7 is manually installed. The source code is available in a github repository: https://github.com/llcmgh/slicer_tract_querier
* Sample output: [[File:WMQLModuleSampleOutput.png]]
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* Overall view with initial full set of fiber tract and user interface:  
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[[File:WMQLModuleSampleOutput.png||1000px]]
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* Zoom-in on the user interface, with the window to enter the WMQL command:
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[[File:WMQLModuleSampleOutput1.png||500px]]
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* Extracted fibers overlaid on initial full set of fibers:
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[[File:WMQLModuleSampleOutput2.png||800px]]
  
 
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Latest revision as of 00:21, 10 January 2014

Home < 2014 Project Week:WMQLExtension


Key Investigators

  • MGH: Lichen Liang
  • BWH: Peter Savadjiev, Lauren O'Donnell, Steve Pieper

Project Description

Objective

Work towards creating a Slicer4 extension for the white matter query language, originally developed by Demian Wassermann.

Approach, Plan

We currently have the WMQL as a python scripted module. We need to resolve several issues:

  • how to incorporate dependencies, such as numpy 1.7.
  • extend the user interface
  • create documentation
  • create Slicer 4 extension

Progress

  • The major technical hurdle that remains to be solved before creating a Slicer extension is the code's dependency on numpy 1.7. A long-term solution would be to update Slicer to work with numpy 1.7.
  • In the meantime, we have a working prototype for a Slicer module that works if numpy 1.7 is manually installed. The source code is available in a github repository: https://github.com/llcmgh/slicer_tract_querier
  • Overall view with initial full set of fiber tract and user interface:

WMQLModuleSampleOutput.png

  • Zoom-in on the user interface, with the window to enter the WMQL command:

WMQLModuleSampleOutput1.png

  • Extracted fibers overlaid on initial full set of fibers:

WMQLModuleSampleOutput2.png