Difference between revisions of "2014 Winter Project Week"

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Back to [[Project Events]], [[AHM_2014]], [[Events]]
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Back to [[Events]]
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Go to  [[AHM_2014| AHM 2014]]
  
__NOTOC__
 
 
[[image:PW-SLC2014.png|300px]]
 
[[image:PW-SLC2014.png|300px]]
  
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=Welcome to the web page for the 18th Project Week!=
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==Summary==
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The 18th PROJECT EVENT was held January 6-10, 2014 in Salt Lake City.  It recorded 70 registered attendees, who worked on 66 projects. These attendees represented 13 academic sites (Brigham and Women's Hospital, University of Alabama, UNC Chapel Hill, MIT, UIowa, Queen University, Massachusetts General Hospital, Princess Margaret Hospital, University of Michigan, Johns Hopkins University, Stony Brook University, Shiga University of Medical Science, SCI Institute) and 4 companies (Kitware, Isomics, GE Research, AZE Technology). The agenda and projects are detailed below.
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A [[Project_Events#Past_Project_Weeks|summary]] of all past Project Events.
  
 
Project Week is a hands on activity -- programming using the open source [[NA-MIC-Kit|NA-MIC Kit]], algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January.   
 
Project Week is a hands on activity -- programming using the open source [[NA-MIC-Kit|NA-MIC Kit]], algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January.   
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The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools.  The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical.  To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects.  On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.
 
The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools.  The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical.  To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects.  On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.
  
A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].
 
 
= Dates.Venue.Registration =
 
= Dates.Venue.Registration =
  
 
Please [[AHM_2014#Dates_Venue_Registration|click here for Dates, Venue, and Registration]] for this event.
 
Please [[AHM_2014#Dates_Venue_Registration|click here for Dates, Venue, and Registration]] for this event.
 
= [[AHM_2014#Agenda|'''AGENDA''']] and Project List=
 
  
 
Please:
 
Please:
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=Background and Preparation=
 
=Background and Preparation=
 
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Please make sure that you are on the [http://public.kitware.com/cgi-bin/mailman/listinfo/na-mic-project-week NA-MIC Project Week mailing list]
A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].
 
 
 
Please make sure that you are on the [http://public.kitware.com/cgi-bin/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]
 
  
 
=Projects=
 
=Projects=
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==Huntington's Disease==
 
==Huntington's Disease==
*[[2014_Project_Week:DWIDispersion|DWI Dispersion & Compressed Sensing Conversions]] (Hans, CF, Peter Savadjiev, Kent, David)
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*[[2014_Project_Week:DWIDispersion|DWI Dispersion & Compressed Sensing Conversions]] (Hans, CF, Peter Savadjiev, Kent, Dave Welch)
*[[2014_Project_Week:Modules scripting|Slicer module scripting]] (David)
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*[[2014_Project_Week:Modules scripting|Slicer module scripting]] (Dave, Bradley Lowekamp)
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*[[2014_Project_Week:QA module| QA module]] (Dave)
 
*[[2014_Project_Week:DWIConverter|DWIConverter]] (Hans, Kent)
 
*[[2014_Project_Week:DWIConverter|DWIConverter]] (Hans, Kent)
 
*[[2014_Project_Week:Slicer_Based_Surface_Template_Estimation|Slicer Based Surface Template Estimation]] (Saurabh Jain, Steve Pieper, Hans Johnson, Josh Cates)
 
*[[2014_Project_Week:Slicer_Based_Surface_Template_Estimation|Slicer Based Surface Template Estimation]] (Saurabh Jain, Steve Pieper, Hans Johnson, Josh Cates)
 
*[[2014_Project_Week:HD_4DShapes|4D shape analysis: application to HD ]] (James Fishbaugh,Hans Johnson, Guido Gerig)
 
*[[2014_Project_Week:HD_4DShapes|4D shape analysis: application to HD ]] (James Fishbaugh,Hans Johnson, Guido Gerig)
 
*[[2014_Project_Week:Shape_Registration_and_Regression|Shape registration and regression in Slicer4 ]] (James Fishbaugh,Hans Johnson, Guido Gerig)
 
*[[2014_Project_Week:Shape_Registration_and_Regression|Shape registration and regression in Slicer4 ]] (James Fishbaugh,Hans Johnson, Guido Gerig)
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*[[2014_Project_Week:WMQLExtension|WMQL implementation as a Slicer extension]] (Lichen Liang, Peter Savadjiev, Lauren O'Donnell, Steve Pieper)
  
 
==Head and Neck Cancer==
 
==Head and Neck Cancer==
*[[2014_Project_Week:DIR_validation|DIR Validation]] (Nadya and Greg)
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*[[2014_Project_Week:DIR_Validation|DIR Validation: Landmark Mismatch Error]] (Nadya and Greg)
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*[[2014_Project_Week:Vector_Field|DIR Validation: Vector Field Analysis]] (Nadya and Greg)
 
*[[2014_Project_Week:Hybrid_bspline|Hybrid B Spline]] (Nadya, Greg, Steve)
 
*[[2014_Project_Week:Hybrid_bspline|Hybrid B Spline]] (Nadya, Greg, Steve)
 
*[[2014_Project_Week:CarreraSlice|Interactive Segmentation]] (Ivan, LiangJia, Nadya, Yi, Greg, Allen)
 
*[[2014_Project_Week:CarreraSlice|Interactive Segmentation]] (Ivan, LiangJia, Nadya, Yi, Greg, Allen)
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*[[2014_Project_Week:OpenIGTLink| OpenIGTLink Interface: New data types and structures]] (Junichi Tokuda, Andras Lasso, Steve Piper, ???)
 
*[[2014_Project_Week:OpenIGTLink| OpenIGTLink Interface: New data types and structures]] (Junichi Tokuda, Andras Lasso, Steve Piper, ???)
 
*[[2014_Project_Week:Ultrasound Visualization and Navigation in Neurosurgery|Ultrasound Visualization and Navigation in Neurosurgery]] (Matthew Toews, Alireza Mehrtash, Csaba Pinter, Andras Lasso, Steve Pieper, William M. Wells III)
 
*[[2014_Project_Week:Ultrasound Visualization and Navigation in Neurosurgery|Ultrasound Visualization and Navigation in Neurosurgery]] (Matthew Toews, Alireza Mehrtash, Csaba Pinter, Andras Lasso, Steve Pieper, William M. Wells III)
*[[2014_Project_Week:PercutaneousApproachAnalysis| Percutaneous Approach Analysis]] (Atsushi Yamada, Junichi Tokuda, Koichiro Murakami, ??)
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*[[2014_Project_Week:PercutaneousApproachAnalysis| Percutaneous Approach Analysis]] (Atsushi Yamada, Junichi Tokuda, Koichiro Murakami)
*[[2014_Project_Week:EndoscopeConsole| Endoscope Console]] (Atsushi Yamada, Junichi Tokuda, ??)
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*[[2014_Project_Week:EndoscopeConsole| Endoscope Console]] (Atsushi Yamada, Junichi Tokuda, Laurent Chauvin)
 
*[[2014_Project_Week:Statistical Shape Model for robotic spine surgery| Statistical Shape Model for robotic spine surgery]] (Marine Clogenson, ???)
 
*[[2014_Project_Week:Statistical Shape Model for robotic spine surgery| Statistical Shape Model for robotic spine surgery]] (Marine Clogenson, ???)
 
*[[2014_Project_Week:ImmersiveVR| Immersive VR devices]] (Franklin King, Andras Lasso)
 
*[[2014_Project_Week:ImmersiveVR| Immersive VR devices]] (Franklin King, Andras Lasso)
  
 
==Radiation Therapy==
 
==Radiation Therapy==
*[[2014_Project_Week:DICOM_RT|DICOM RT Export]] (Greg Sharp, Kevin Wang, others??)
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*[[2014_Project_Week:DICOM_RT|DICOM RT Export]] (Greg Sharp, Kevin Wang)
*[[2014_Project_Week:DICOM_SRO|DICOM Spatial Registration Export]] (Greg Sharp, Kevin Wang, others??)
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*[[2014_Project_Week:DICOM_SRO|DICOM Spatial Registration Export]] (Greg Sharp, Kevin Wang)
 
*[[2014_Project_Week:Registration_Evaluation|Interactive Registration and Evaluation]] (Kevin Wang, Steve Pieper, Greg Sharp)
 
*[[2014_Project_Week:Registration_Evaluation|Interactive Registration and Evaluation]] (Kevin Wang, Steve Pieper, Greg Sharp)
 
*[[2014_Project_Week:External_Beam_Planning|External Beam Planning Visualization]] (Kevin Wang, Greg Sharp, Csaba Pinter)
 
*[[2014_Project_Week:External_Beam_Planning|External Beam Planning Visualization]] (Kevin Wang, Greg Sharp, Csaba Pinter)
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*[[2014_Project_Week:4D_NIfTI_Multivolume|4D NIfTI Multivolume Support]] (Jayashree, Andrey, Jim, John)
 
*[[2014_Project_Week:4D_NIfTI_Multivolume|4D NIfTI Multivolume Support]] (Jayashree, Andrey, Jim, John)
 
*[[2014_Project_Week:RT_FormatConversions|RT and ITK Format Conversions]] (Jayashree, Andras, Csaba. John)
 
*[[2014_Project_Week:RT_FormatConversions|RT and ITK Format Conversions]] (Jayashree, Andras, Csaba. John)
*[[2014_Project_Week:BatchConvertDICOM|Python Scripting Slicer DICOM read/write to convert segmentation objects]] (Jayashree, Andrey, Alireza, Steve, Jc, Hans, John)
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*[[2014_Project_Week:PkModeling_user_tool|User module for DCE modeling]] (Andrey, Jayashree, Jim, Steve, Ron)
*[[2014_Project_Week:PkModeling_user_tool|User module for DCE modeling]] (Andrey, Jayashree, Jim, Alireza, Steve, Ron)
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*[[2014_Project_Week:DICOM_enhanced_multiframe|DICOM enhanced multiframe object support]] (Andrey, Alireza, David Clunie, Jayashree, Steve, Reinhard, Jim, Rick Herrick)
*[[2014_Project_Week:DICOM_enhanced_multiframe|DICOM enhanced multiframe object support]] (Andrey, Alireza, David Clunie, Jayashree, Steve, Reinhard, Jim)
 
 
*[[2014_Project_Week:Quantitative_Index_Computation|Quantitative Index Computation]] (Ethan Ulrich, Reinhard Beichel, Nicole, Andrey, Jim)
 
*[[2014_Project_Week:Quantitative_Index_Computation|Quantitative Index Computation]] (Ethan Ulrich, Reinhard Beichel, Nicole, Andrey, Jim)
 
*[[2014_Project_Week:TCIA Browser Extension in Slicer|TCIA Browser Extension in Slicer]] (Alireza, Andrey, Steve, Ron)
 
*[[2014_Project_Week:TCIA Browser Extension in Slicer|TCIA Browser Extension in Slicer]] (Alireza, Andrey, Steve, Ron)
*[[2014_Project_Week:Slicer DICOM Module Interface Redesign|Slicer DICOM Module Interface Redesign]] (Alireza, Andrey, Steve, Ron)
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*[[2014_Project_Week:Slicer DICOM Module Interface Redesign|Slicer DICOM Module Interface Redesign]] (Alireza, Andrey, Steve, Ron, Rick Herrick)
  
 
==Infrastructure==
 
==Infrastructure==
*[[2014_Project_Week:MRMLSceneSpeedUp|MRML Scene speed up]] (Jc, Andras Lasso)
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*[[2014_Project_Week:MultidimensionalDataSupport|Multidimensional data support]] (Andras Lasso, Andriy Fedorov, Steve Pieper, JC, Kevin Wang, Rick Herrick)
*[[2014_Project_Week:MultidimensionalDataSupport|Multidimensional data support]] (Andras Lasso, Andriy Fedorov, Steve Pieper, JC, Kevin Wang)
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*[[2014_Project_Week:MarkupsModule|Markups Module]] (Nicole Aucoin, Rick Herrick)
*[[2014_Project_Week:MarkupsModule|Markups Module]] (Nicole Aucoin)
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* [[2014_Winter_Project_Week:Logging|Logging (standardization, logging to file)]] (Jc, Andras Lasso, Nicole Aucoin, Steve Pieper, Csaba Pinter, ???, Rick Herrick)
* [[2014_Winter_Project_Week:Logging|Logging (standardization, logging to file)]] (Andras Lasso, Nicole Aucoin, Steve Pieper, Jc, Csaba Pinter, ???)
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*[[2014_Project_Week:CLI|CLI]] (Jim Miller, Matt McCormick, Nicole Aucoin, Steve Pieper, Jc)
*[[2014_Project_Week:CLI|CLI]] (Jim Miller)
 
 
* [[2014_Winter_Project_Week:Steered Registration|Steered Registration (LandmarkRegistration module)]] (Steve, Greg, Kevin, Vinicius, Marcel)
 
* [[2014_Winter_Project_Week:Steered Registration|Steered Registration (LandmarkRegistration module)]] (Steve, Greg, Kevin, Vinicius, Marcel)
 
* [[2014_Winter_Project_Week:MRB Extension Dependencies|MRB Extension Dependencies]] (Steve, Jc, Jim, Nicole, Alex)
 
* [[2014_Winter_Project_Week:MRB Extension Dependencies|MRB Extension Dependencies]] (Steve, Jc, Jim, Nicole, Alex)
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* [[2014_Winter_Project_Week:NonlinearTransforms|Integration nonlinear transforms]] (Alex Yarmarkovich, Csaba Pinter, Andras Lasso, Steve Pieper, ???)
 
* [[2014_Winter_Project_Week:NonlinearTransforms|Integration nonlinear transforms]] (Alex Yarmarkovich, Csaba Pinter, Andras Lasso, Steve Pieper, ???)
 
* [[2014_Winter_Project_Week:ParameterSerialization | JSON Parameter Serialization]] (Matt McCormick, Steve Pieper, Jim Miller)
 
* [[2014_Winter_Project_Week:ParameterSerialization | JSON Parameter Serialization]] (Matt McCormick, Steve Pieper, Jim Miller)
* [[2014_Winter_Project_Week:XNATSlicerLink| 3DSlicer annotations in XNAT]] (Erwin Vast, Nicole Aucoin, Andrey Fedorov)
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* [[2014_Winter_Project_Week:XNATSlicerLink| 3DSlicer annotations in XNAT]] (Erwin Vast, Nicole Aucoin, Andrey Fedorov, Rick Herrick)
 
* [[2014_Winter_Project_Week:PlanarImage|Planar Images]] (Franklin King, Csaba Pinter, Andras Lasso)
 
* [[2014_Winter_Project_Week:PlanarImage|Planar Images]] (Franklin King, Csaba Pinter, Andras Lasso)

Latest revision as of 15:51, 30 March 2017

Home < 2014 Winter Project Week

Back to Events

Go to AHM 2014

PW-SLC2014.png

Welcome to the web page for the 18th Project Week!

Summary

The 18th PROJECT EVENT was held January 6-10, 2014 in Salt Lake City. It recorded 70 registered attendees, who worked on 66 projects. These attendees represented 13 academic sites (Brigham and Women's Hospital, University of Alabama, UNC Chapel Hill, MIT, UIowa, Queen University, Massachusetts General Hospital, Princess Margaret Hospital, University of Michigan, Johns Hopkins University, Stony Brook University, Shiga University of Medical Science, SCI Institute) and 4 companies (Kitware, Isomics, GE Research, AZE Technology). The agenda and projects are detailed below.

A summary of all past Project Events.

Project Week is a hands on activity -- programming using the open source NA-MIC Kit, algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January.

Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event. Invitations to this call are sent to all NA-MIC members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.

The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools. The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical. To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects. On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.

Dates.Venue.Registration

Please click here for Dates, Venue, and Registration for this event.

Please:

Background and Preparation

Please make sure that you are on the NA-MIC Project Week mailing list

Projects

TBI

Atrial Fibrillation

Huntington's Disease

Head and Neck Cancer

Slicer4 Extensions

Cardiac

Stroke

Brain Segmentation

Image-Guided Interventions

Radiation Therapy

TMJ-OA

Chronic Obstructive Pulmonary Disease

QIICR

Infrastructure