Difference between revisions of "2014 Winter Project Week:CIP Core"

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==Key Investigators==
 
==Key Investigators==
Raul San Jose, Rola Harmouche, James Ross
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Raul San Jose, Rola Harmouche, Pietro Nardelli,  James Ross
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==Project Description==
 
==Project Description==
  
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* The Chest Imaging Platform (CIP) is a general purpose library for analysis of chest images for the characterization of chronic lung diseases. The main objective is to make the tools available to the public by providing a common infrastructure that in turn can be incorporating into Slicer by means of the Slicer CIP library.
 
* The Chest Imaging Platform (CIP) is a general purpose library for analysis of chest images for the characterization of chronic lung diseases. The main objective is to make the tools available to the public by providing a common infrastructure that in turn can be incorporating into Slicer by means of the Slicer CIP library.
 
* The goal for this week is to consolidate several core functionalities:  
 
* The goal for this week is to consolidate several core functionalities:  
** Integration of scale-space particles in VTK
+
** Integration of scale-space particles in VTK.
** Development of the phenotype extraction library in cip_python
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** Development of the phenotype extraction library in cip_python.
** Explore the integration with ontologies in the chest labelmap definition
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** Explore the integration with ontologies in our chest labelmap definition that employs a region/type coding scheme.
  
 
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<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
* We will expand CIP interfacing with Teem, VTK, ITK and python components.
+
* We will wrap Teem functionality within a VTK class to implement scale-space particles.
 +
* Consolidate different phenotype extraction scripts under cid_python.
 +
* Discuss the possibilities of having "rich" labelmaps based on well-defined ontologies.  
 
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</div>
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<h3>Progress</h3>
 
<h3>Progress</h3>
*  
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* Private Github repository: https://github.com/acil-bwh/ChestImagingPlatformPrivate
 +
* VTK class has been developed to wrap pull library in Teem. Testing is under progress
 +
* Discuss with QIIR the potential use of DICOM objects and common ontologies to represent anatomical regions and disease states
 
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Latest revision as of 16:10, 10 January 2014

Home < 2014 Winter Project Week:CIP Core

Key Investigators

Raul San Jose, Rola Harmouche, Pietro Nardelli, James Ross

Project Description

Objective

  • The Chest Imaging Platform (CIP) is a general purpose library for analysis of chest images for the characterization of chronic lung diseases. The main objective is to make the tools available to the public by providing a common infrastructure that in turn can be incorporating into Slicer by means of the Slicer CIP library.
  • The goal for this week is to consolidate several core functionalities:
    • Integration of scale-space particles in VTK.
    • Development of the phenotype extraction library in cip_python.
    • Explore the integration with ontologies in our chest labelmap definition that employs a region/type coding scheme.

Approach, Plan

  • We will wrap Teem functionality within a VTK class to implement scale-space particles.
  • Consolidate different phenotype extraction scripts under cid_python.
  • Discuss the possibilities of having "rich" labelmaps based on well-defined ontologies.

Progress

  • Private Github repository: https://github.com/acil-bwh/ChestImagingPlatformPrivate
  • VTK class has been developed to wrap pull library in Teem. Testing is under progress
  • Discuss with QIIR the potential use of DICOM objects and common ontologies to represent anatomical regions and disease states