2017 Winter Project Week

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Welcome to the web page for the 24th Project Week!

The 24th NA-MIC Project Week open source hackathon is being held during the week of January 9-13, 2017 at MIT. Please go through this page for information, and if you have questions, please contact Tina Kapur, PhD.

Logistics

  • Dates: January 9-13, 2017.
  • Location: MIT CSAIL, Cambridge, MA. (Rooms: Kiva, R&D)
  • Transportation: Public transportation is highly encouraged, as no parking permits will be issued by MIT. For a list of local garages, please see here
  • REGISTRATION: Register here. Registration Fee: $330.
  • Hotel: Similar to previous years, no rooms have been blocked in a particular hotel.
  • Next Project Week:' June 26-30, 2017, Catanzaro, Italy

Introduction

The National Alliance for Medical Image Computing (NAMIC), was founded in 2005 and chartered with building a computational infrastructure to support biomedical research as part of the NIH funded NCBC program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform 3D Slicer, enhancements to the underlying building blocks VTK, ITK, CMake, and CDash, and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an open source hackathon event called Project Week.

Project Week is a semi-annual open source hackathon which draws 60-120 researchers. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.

Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.

Several funded projects use the Project Week as a place to convene and collaborate. These include NAC, NCIGT, QIICR, and OCAIRO.

A summary of all previous Project Events is available here.

Please make sure that you are on the NA-MIC Project Week mailing list

Conference Calls for Preparation

Conference call phone number and notes are available here.

Calendar

The events are listed in the calendar below. Note that due to a current known limitation of our infrastructure, you will need to manually navigate to the week of January 8, 2017 to see the relevant events.


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iCal (.ics) link: https://calendar.google.com/calendar/ical/kitware.com_sb07i171olac9aavh46ir495c4%40group.calendar.google.com/public/basic.ics

Projects

Learning and GPUs

    1. Needle Segmentation from MRI (Ziyang Wang, Guillaume Pernelle, Paolo Zaffino, Tina Kapur)
    2. Deep Learning for Synthetic MRI (Frank Preiswerk, Yaofei "Ada" Wang)
    3. An open-source tool to classify TMJ OA condyles (Priscille de Dumast, Juan Carlos Prieto, Beatriz Paniagua)
    4. DeepInfer: Open-source Deep Learning Deployment Toolkit (Alireza Mehrtash, Mehran Pesteie, Yang (Silvia) Yixin, Tina Kapur, Sandy Wells, Purang Abolmaesumi, Andriy Fedorov)
    5. Evaluate Deep Learning for binary cancer lesion classification (Curt Lisle)

    Web Technologies

    1. Web Technology and Slicer (Steve Pieper, Erik Zeigler, Curt Lisle, Satra Ghosh, Hans Meine)
    2. Slicer Qt5 and Python3 (Steve Pieper, Jean-Christophe Fillion-Robin, Andras Lasso, Andrey Fedorov)
    3. OAuth2.0 authentication in SlicerPathology (Erich Bremer, Steve Pieper)
    4. Explore integration of Web-based imaging workflows with Slicer (Curt Lisle, Satra Gosh, Steve Peiper)
    5. IPFS and NoSQL for cloud databases (Hans Meine, Steve Pieper)
    6. Web-based system to federate biological, clinical and morphological data (Juan Carlos Prieto, Clément Mirabel)
    7. Electron App to add, navigate and visualize DICOM images (Smruti Padhy, Satrajit Ghosh, Mathias Goncalves)

    IGT: Navigation, Robotics, Surgical Planning

    dMRI

    Quantitative Imaging Informatics

    Visualization

    Infrastructure

    To be Categorized

    Registrants

    Do not add your name to this list - it is maintained by the organizers based on your paid registration. To register, visit this registration site.

    1. A, Zeina :: SHBOUL
    2. Aerts, Hugo :: DFCI-Harvard
    3. Alam, Mahbubul :: Old Dominion University
    4. Anderson, Peter :: Retired
    5. Andruejol, Johan :: Kitware, Inc.
    6. Bakeng, Janne Beate :: SINTEF
    7. Beers, Andrew :: Massachusetts General Hospital
    8. Bernal Rusiel, Jorge Luis :: Boston Children's Hospital
    9. Bremer, Erich :: Stony Brook University
    10. Burke, Brice :: American University of Antigua College of Medicine
    11. Cetin Karayumak, Suheyla :: Brigham and Women's Hospital
    12. Chae, Michael :: Monash University
    13. Chauvin, Laurent :: ETS
    14. Dalca, Adrian :: Massachusetts Institute of Technology
    15. Fedorov, Andriy :: Brigham and Women's Hospital
    16. Fillion-Robin, Jean-Christophe :: Kitware, Inc.
    17. Fishbaugh, James :: New York University
    18. Frank, Tobias :: Leibniz Universität Hannover
    19. García Mato, David :: Queen´s University / Universidad Carlos III de Madrid
    20. Girault, Alexis :: Kitware, Inc.
    21. Golland, Polina :: Massachusetts Institute of Technology
    22. Gollub, Randy :: Massachusetts General Hospital
    23. Gong, Shun :: Brigham and Women's Hospital
    24. Guerrier de Dumast, Priscille :: University of Michigan
    25. Harris, Gordon :: Massachusetts General Hospital
    26. Herz, Christian :: Brigham and Women's Hospital
    27. Hong, Sungmin :: New York University
    28. Hosny, Ahmed :: Dana-Farber
    29. Jagadeesan, Jayender :: Brigham and Women's Hospital
    30. Jensen, Henrik G. :: University of Copenhagen
    31. Kapur, Tina :: Brigham and Women's Hospital
    32. Kikinis, Ron :: Brigham and Women's Hospital
    33. Lasso, Andras :: PerkLab, Queen's University
    34. Lauer, Rebekka :: Humboldt University Berlin
    35. Lisle, Curtis :: KnowledgeVis, LLC
    36. Mastrogiacomo, Katie :: Brigham and Women's Hospital
    37. Mateus, D. :: TUM
    38. Mehrtash, Alireza :: Brigham and Women's Hospital
    39. Meine, Hans :: University of Bremen
    40. Meyer, Anneke :: University of Magdeburg
    41. Miller, James :: GE Research
    42. Mirabel, Clement :: University of Michigan
    43. Nitsch, Jennifer :: University of Bremen
    44. Norton, Isaiah :: Brigham and Women's Hospital
    45. O'Donnell, Lauren :: Brigham and Women's Hospital
    46. Oram, Louise :: The Intervention Centre-Oslo University Hospital
    47. Paniagua, Beatriz :: Kitware, Inc.
    48. Parmar, Chintan :: DFCI-Harvard Medical School
    49. Peled, Sharon :: Brigham and Women's Hospital
    50. Pieper, Steve :: Isomics, Inc.
    51. Pinter, Csaba :: Queen's University
    52. Preiswerk, Frank :: Brigham and Women's Hospital/Harvard Medical School
    53. Pujol, Sonia :: Brigham and Women's Hospital/Harvard Medical School
    54. Rankin, Adam :: Robarts Research Institute
    55. Rheault, Francois :: Université de Sherbrooke
    56. Roethe, Anna :: Humboldt University / Charité University Hospital Berlin
    57. Sharp, Gregory :: Massachusetts General Hospital
    58. Sridharan, Patmaa :: University of Pennsylvania-CBICA
    59. Vidyaratne, Lasitha :: Old Dominion University
    60. Wang, Yaofei :: Brigham and Women's Hospital
    61. Westin, Carl-Fredrik :: Brigham and Women's Hospital, Harvard Medical School
    62. Yang, Yixin :: Brigham and Women's Hospital
    63. Ye, Wu :: Brigham and Women's Hospital
    64. Zaffino, Paolo :: Magna Graecia University of Catanzaro, Italy
    65. Zeleznik, Roman :: DFCI
    66. Zhang, Fan :: Brigham and Women's Hospital
    67. Zhang, Miaomiao :: Massachusetts Institute of Technology
    68. Zhang, Yuqian :: Brigham and Women's Hospital
    69. Ziegler, Erik :: Open Health Imaging Foundation/Mass General Hospital
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