Difference between revisions of "AHM 2009"

From NAMIC Wiki
Jump to: navigation, search
 
(48 intermediate revisions by 14 users not shown)
Line 1: Line 1:
 
__NOTOC__
 
__NOTOC__
 +
Back to [[Events]]
 +
 
== Introduction ==
 
== Introduction ==
 
{| border="00" cellpadding="8" cellspacing="0"
 
{| border="00" cellpadding="8" cellspacing="0"
Line 10: Line 12:
  
 
For information about Utah as a travel destination click [http://www.utah.com '''here'''].
 
For information about Utah as a travel destination click [http://www.utah.com '''here'''].
| style="background: #ebeced" colspan="2" align="center"| [[Image:SLC.jpg|center|350px|View of the City]]
+
| style="background: #ebeced" align="center"| [[Image:SLC.jpg|center|350px|View of the City]]
 
|-
 
|-
| style="background: #ebeced"| <b>SLC</b>
+
| style="background: #ebeced"|The 2009 AHM, EAB and Project Week was held <br>'''January 5-9, 2009''', in '''Salt Lake City''', Utah.
| style="background: #ebeced"|The 2009 AHM, EAB and Project Week will be held in Salt Lake City, UT, January 5-9 2009.  
 
 
|}
 
|}
  
 
== Agenda==
 
== Agenda==
(preliminary)
+
 
 +
'''wireless connection: capital-ballroom, namic-ballroomB, namic-amethyst'''<br>
 +
 
 
{| border="1" cellpadding="5"
 
{| border="1" cellpadding="5"
 
|- style="background:#ebeced; color:black" align="left"  
 
|- style="background:#ebeced; color:black" align="left"  
Line 31: Line 34:
 
| style="background:#b4d597; color:#522200"| '''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
 
| style="background:#b4d597; color:#522200"| '''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
 
| style="background:#b4d597; color:#522200"| '''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
 
| style="background:#b4d597; color:#522200"| '''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
| style="background:#fff6a6; color:#522200"| '''AHM''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol A-B], [[2009_EAB|'''EAB''']] in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus B]
+
| style="background:#fff6a6; color:#522200"| '''AHM''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/Capitol A-B], [[2009_EAB|'''EAB''']] in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus B]
 
'''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus A]
 
'''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus A]
 
| style="background:#b4d597; color:#522200"|'''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
 
| style="background:#b4d597; color:#522200"|'''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
Line 44: Line 47:
 
| style="background:#ffffdd; color:black"|'''8:00-10:00'''  
 
| style="background:#ffffdd; color:black"|'''8:00-10:00'''  
 
| style="background:#ebeced; color:black"|'''9:30''' Core 1 and 2 PI closed session in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol A]
 
| style="background:#ebeced; color:black"|'''9:30''' Core 1 and 2 PI closed session in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol A]
| style="background:#b4d597; color:black"|Project Work <br> '''8:00-9:00''' [[AHM2009:NITRC and Slicer|How to use NITRC and slicer]](Steve, Terry)<br>  
+
| style="background:#b4d597; color:black"|Project Work <br> '''8:00-9:00''' [[AHM2009:NITRC and Slicer|How to use NITRC and slicer]] (Steve, Terry)<br>  
'''9:00-10:00''' [[AHM2009:Batchmake and XNAT|Using Batchmake and XNAT to process large studies]] (Julien Jomier and Dan Marcus) in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
+
'''9:00-10:00''' [[AHM2009:Batchmake and XNAT|Using Batchmake and XNAT to process large studies]] (Stephen Aylward and Dan Marcus) in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/     Amethyst 1]
 
| style="background:#b4d597; color:black"|Project Work <br>'''8:00-9:00''' [[AHM2009:Tutorial Review and Judging|Tutorial Review and Judging]] [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
 
| style="background:#b4d597; color:black"|Project Work <br>'''8:00-9:00''' [[AHM2009:Tutorial Review and Judging|Tutorial Review and Judging]] [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#fff6a6; color:black"|'''8:00''' [[AHM 2009 Introduction|Introduction]], Ron Kikinis <br>
+
'''9:00-10:00''' Particle Correspondence Breakout (Capital Ballroom A)
'''8:05''' [[AHM 2009 NA-MIC Highlights|NA-MIC Highlights]] (Ross Whitaker)<br>
+
| style="background:#fff6a6; color:black"|'''8:00''' [[AHM 2009 Introduction|Introduction]], [http://www.spl.harvard.edu/~kikinis Ron Kikinis] <br>
 +
'''8:05''' [[AHM 2009 NA-MIC Highlights|NA-MIC Highlights]] ([http://www.cs.utah.edu/~whitaker/ Ross Whitaker])<br>
 
'''Roadmap Projects'''<br>
 
'''Roadmap Projects'''<br>
 
'''8:35''': [[AHM2009:JHU|JHU/Queens]] ([http://research.cs.queensu.ca/~gabor/ Gabor Fichtinger])<br>
 
'''8:35''': [[AHM2009:JHU|JHU/Queens]] ([http://research.cs.queensu.ca/~gabor/ Gabor Fichtinger])<br>
'''8:55''': [[AHM2009:UNC|UNC]] ([http://www.med.unc.edu/psych/directories/hazlett.htm Heather Cody])<br>
+
'''8:55''': [[AHM2009:UNC|UNC]] ([http://www.med.unc.edu/psych/directories/faculty/hazlett/ Heather Cody])<br>
 
'''9:15''': [[AHM2009:PNL|PNL]] ([http://pnl.bwh.harvard.edu/people/profiles/kubicki.html Marek Kubicki])<br>
 
'''9:15''': [[AHM2009:PNL|PNL]] ([http://pnl.bwh.harvard.edu/people/profiles/kubicki.html Marek Kubicki])<br>
 
'''9.35''': [[AHM2009:Mind|Mind Institute]] ([http://www.mrn.org/principle-investigators/h.-jeremy-bockholt.html Jeremy Bockolt])<br>
 
'''9.35''': [[AHM2009:Mind|Mind Institute]] ([http://www.mrn.org/principle-investigators/h.-jeremy-bockholt.html Jeremy Bockolt])<br>
| style="background:#b4d597; color:black"|Project Work <br> TBD
+
| style="background:#b4d597; color:black"|Project Work <br>
 
|-
 
|-
 
| style="background:#ffffdd; color:black"|'''10:00-10:30'''  
 
| style="background:#ffffdd; color:black"|'''10:00-10:30'''  
 
| style="background:#ebeced; color:black"| Core 1 and 2 PI closed session
 
| style="background:#ebeced; color:black"| Core 1 and 2 PI closed session
| style="background:#b4d597; color:black"| Coffee
+
| style="background:#b4d597; color:black"| '''10:30-11:30'''[[AHM2009:GUI Testing|Automated GUI Testing for Slicer]] (Sebastien) [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
 
| style="background:#b4d597; color:black"| Coffee
 
| style="background:#b4d597; color:black"| Coffee
 
| style="background:#fff6a6; color:black"| Coffee
 
| style="background:#fff6a6; color:black"| Coffee
| style="background:#b4d597; color:black"| Coffee
+
| style="background:#b4d597; color:black"| '''10:00''' Project Review
 
|-
 
|-
 
| style="background:#ffffdd; color:black"|'''10:30-12:00'''  
 
| style="background:#ffffdd; color:black"|'''10:30-12:00'''  
Line 67: Line 71:
 
| style="background:#b4d597; color:black"|Project Work  
 
| style="background:#b4d597; color:black"|Project Work  
 
| style="background:#b4d597; color:black"|Project Work <br>
 
| style="background:#b4d597; color:black"|Project Work <br>
TBD
+
 
 
| style="background:#fff6a6; color:black"|
 
| style="background:#fff6a6; color:black"|
 
'''Collaborations'''<br>
 
'''Collaborations'''<br>
'''10:30''': Iowa collaboration ([http://www.engineering.uiowa.edu/faculty-staff/profile-directory/bme/grosland_n.php Nicole Grosland])<br>
+
'''10:30''': [[media:NA-MIC_Mesh_Collaboration_2009.ppt|Iowa collaboration]] ([http://www.engineering.uiowa.edu/faculty-staff/profile-directory/bme/grosland_n.php Nicole Grosland])<br>
'''10:45''': Wake Forest collaboration ([http://www.ece.vt.edu/faculty/wyatt.html Chris Wyatt])<br>
+
'''10:45''': [[AHM2009:ExternalWFU|Wake Forest collaboration]] ([http://www.ece.vt.edu/faculty/wyatt.html Chris Wyatt])<br>
'''11:00''': Georgetown U. collaboration ([http://www.isis.georgetown.edu/PORTALVBVS/DesktopDefault.aspx?tabindex=2&tabid=8 Kevin Cleary])<br>
+
'''11:00''': [[media:NA-MIC_Cleary_RF_Ablation_Georgetown_Jan_2009.ppt|Georgetown U. collaboration]] ([http://www.isis.georgetown.edu/PORTALVBVS/DesktopDefault.aspx?tabindex=2&tabid=8 Kevin Cleary])<br>
'''11:15''': UNC collaboration ([http://www.med.unc.edu/~dgshen Dinggang Shen])<br>
+
'''11:15''': [[media:HAMMER.ppt | UNC collaboration]] ([http://www.med.unc.edu/~dgshen Dinggang Shen])<br>
'''11:30''': Mario Negri Collaboration ([http://villacamozzi.marionegri.it/~luca/ Luca Antiga])<br>
+
'''11:30''': [[media:AHM2009_MarioNegriCollaboration.pdf | Mario Negri Collaboration]] ([http://villacamozzi.marionegri.it/~luca/ Luca Antiga])<br>
 
'''11:45''': Discussion<br>
 
'''11:45''': Discussion<br>
 
| style="background:#b4d597; color:black"|Project Work
 
| style="background:#b4d597; color:black"|Project Work
Line 87: Line 91:
 
| style="background:#ffffdd; color:black"|'''1:00-3:00'''  
 
| style="background:#ffffdd; color:black"|'''1:00-3:00'''  
 
| style="background:#b4d597; color:black"|[[2009_Winter_Project_Week|Begin Project Activities]]: Introduce Projects and Participants  
 
| style="background:#b4d597; color:black"|[[2009_Winter_Project_Week|Begin Project Activities]]: Introduce Projects and Participants  
| style="background:#b4d597; color:black"|[[AHM 2009:DTI Breakout|DTI Discussion]] (Sonia, Randy, Others) [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
+
| style="background:#b4d597; color:black"|[[AHM 2009:DTI Breakout|DTI Discussion]] (Sonia, Randy, Others) [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/Amethyst 1]
| style="background:#b4d597; color:black"|Project Work <br> [[AHM2009:Python Modules|Python Modules]] (Luca Antiga)
+
| style="background:#b4d597; color:black"|Project Work (Capital Ballroom A) <br> '''1:00-2:00''' [[AHM2009:Python Modules|Python Modules]] (Luca Antiga) <br> '''2:00-3:00''' [[media:NAMIC-Widgets-2009-AHM.ppt | VTK Widgets]] (Will Schroeder)  
 
| style="background:#fff6a6; color:black"|
 
| style="background:#fff6a6; color:black"|
'''Tools and Tutorials''' (coordinator) <br>
+
'''Tools and Tutorials''' <br>
'''1:00-1:20''' [[AHM2009:Slicer|Slicer]] ([http://www.spl.harvard.edu/pages/People/pieper Steve Pieper])<br>
+
'''1:00-1:20''' [[AHM2009:Slicer|Slicer]] ([http://www.spl.harvard.edu/~pieper Steve Pieper])<br>
'''1:20-1:40''' [[AHM2009:Plug-ins|Plug-ins for Slicer]] ([http://wiki.na-mic.org/Wiki/index.php/User:Millerjv Jim Miller])<br>
+
'''1:20-1:40''' [[AHM2009:Plug-ins|Interfacing with Slicer]] ([http://wiki.na-mic.org/Wiki/index.php/User:Millerjv Jim Miller])<br>
 
'''1:40-2:00''' [[AHM2009:Non-interactive-tools|Non-interactive tools]] ([http://www.kitware.com/company/team/aylward.html Stephen Aylward])<br>
 
'''1:40-2:00''' [[AHM2009:Non-interactive-tools|Non-interactive tools]] ([http://www.kitware.com/company/team/aylward.html Stephen Aylward])<br>
'''2:00-3:00''' [[AHM2009:Tutorial-Contest-Winners|Tutorial Contest]]: Presentations by the winners ([http://www.nmr.mgh.harvard.edu/martinos/people/showPerson.php?people_id=64 Randy Gollub])<br>
+
'''2:00-2:30''' [[media:NA-MIC_TrainingCore_AHM2009_spujol.ppt‎| Training Core Update]] ([http://lmi.bwh.harvard.edu/~spujol/ Sonia Pujol])
 +
'''2:30-3:00''' [[AHM2009:Tutorial-Contest-Winners|Tutorial Contest]]: Presentations by the winners ([http://www.nmr.mgh.harvard.edu/martinos/people/showPerson.php?people_id=64 Randy Gollub])<br>
 
| style="background:#ebeced; color:black"|
 
| style="background:#ebeced; color:black"|
 
|-
 
|-
Line 105: Line 110:
 
|-
 
|-
 
| style="background:#ffffdd; color:black"|'''3:00-5:00'''  
 
| style="background:#ffffdd; color:black"|'''3:00-5:00'''  
| style="background:#b4d597; color:black"|'''3:30-4:30''' [[AHM2009:GUI Testing|GUI Testing and Developing Test Modules for Slicer]] (Sebastien) [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
+
| style="background:#b4d597; color:black"|  
| style="background:#b4d597; color:black"|'''3:30-4:30''' [[AHM2009:Cell Segmentation|Cell Segmentation]] (Alex G) <br> Project Work <br>TBD [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
+
| style="background:#b4d597; color:black"|'''3:30-4:30''' [[AHM2009:Cell Segmentation|Cell Segmentation]] (Alex G) <br> Project Work <br>[http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
 
| style="background:#b4d597; color:black"|Project Work <br>'''3:00-5:00''' Meshing Tutorial (Nicole Grosland, Vincent Magnotta)<br>[[Iowa_Meshing_Tutorial]]<br>[http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
 
| style="background:#b4d597; color:black"|Project Work <br>'''3:00-5:00''' Meshing Tutorial (Nicole Grosland, Vincent Magnotta)<br>[[Iowa_Meshing_Tutorial]]<br>[http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
 
| style="background:#fff6a6; color:black"|[[2008 EAB|EAB]]<br>[http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus B]<br>'''3:00-4:00''' Discussion with NA-MIC Leadership<br> '''4:00-5:00''' Closed Session
 
| style="background:#fff6a6; color:black"|[[2008 EAB|EAB]]<br>[http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus B]<br>'''3:00-4:00''' Discussion with NA-MIC Leadership<br> '''4:00-5:00''' Closed Session
Line 114: Line 119:
 
| style="background:#b4d597; color:black"|
 
| style="background:#b4d597; color:black"|
 
| style="background:#b4d597; color:black"|
 
| style="background:#b4d597; color:black"|
| style="background:#b4d597; color:black"|'''05:00-06:00''' [[AHM2009:Meshing Breakout | Meshing Breakout]]
+
| style="background:#b4d597; color:black"|'''05:00-06:00''' [[AHM2009:Meshing Breakout | Meshing Breakout]] (Capital Ballroom A)
 
| style="background:#fff6a6; color:black"|'''6:00''' Optional: [http://www.skisaltlake.com/murphys.htm Beer at Murphy's] (like last year)
 
| style="background:#fff6a6; color:black"|'''6:00''' Optional: [http://www.skisaltlake.com/murphys.htm Beer at Murphy's] (like last year)
 
| style="background:#ebeced; color:black"|  
 
| style="background:#ebeced; color:black"|  
Line 134: Line 139:
  
 
== Attendees ==
 
== Attendees ==
 
+
This is the final list of all registered attendees for this meeting. 23:37, 3 February 2009 (UTC)
Please follow http://www.sci.utah.edu/namic2009/registration.html to complete your online registration.  The organizers will periodically publish the list of registered attendees in the space below.  Attendees should '''NOT''' add their names in this section. This list is a snapshop as of 20:19, 31 December 2008 (UTC)
+
# Yi Gao Georgia Tech Core 1
# Michael Ackerman National Library of Medicine at NIH
+
# Ivan Kolesov Georgia Tech Core 1
# Luca Antiga Mario Negri Institute
+
# Vandana Mohan Georgia Tech Core 1
# Kevin Archie Washington University
+
# Allen Tannenbaum Georgia Tech Core 1
# Nicole Aucoin BWH
+
# Michal Depa MIT CSAIL Core 1
# Stephen Aylward Kitware, Inc.
+
# Polina Golland MIT CSAIL Core 1
# Sebastien Barre Kitware, Inc.
+
# Bjoern Menze MIT CSAIL Core 1
# Morry Blumenfeld EAB
+
# Koen Van Leemput MIT CSAIL Core 1
# H Jeremy Bockholt The Mind Research Network
+
# Archana Venkataraman MIT CSAIL Core 1
# Sylvain Bouix PNL
+
# Xiaogang Wang MIT CSAIL Core 1
# Josh Cates SCI Institute
+
# Josh Cates SCI Institute Core 1
# German Cavelier NIH-NIMH
+
# Manasi Datar SCI Institute Core 1
# David Chen NLM
+
# Guido Gerig SCI Institute Core 1
# Kiyoyuki Chinzei AIST
+
# Casey Goodlett SCI Institute Core 1
# Kevin Cleary Georgetown University
+
# Sylvain Gouttard SCI Institute Core 1
# Zohara Cohen NIH
+
# Marcel Prastawa SCI Institute Core 1
# Manasi Datar SCI Institute
+
# Ross Whitaker SCI Institute Core 1
# julien de Siebenthal BWH
+
# Cedric Mathieu UNC Chapel Hill NA-MIC Core 1
# Michal Depa MIT CSAIL
+
# Marc Niethammer UNC Chapel Hill NA-MIC Core 1
# Harish Doddi Stanford University
+
# Ipek Oguz UNC Chapel Hill NA-MIC Core 1
# Andriy Fedorov SPL-BWH
+
# Martin Styner UNC Chapel Hill NA-MIC Core 1
# Gabor Fichtinger Queens Univ
+
# Nicole Aucoin BWH NA-MIC Core 2
# Yi Gao Georgia Tech
+
# James Miller GE Global Research NA-MIC Core 2
# Arnaud Gelas Harvard Medical School
+
# Xiaodong Tao GE Global Research NA-MIC Core 2
# Guido Gerig SCI Institute
+
# Terry Lorber Isomics, Inc Core 2
# Polina Golland MIT CSAIL
+
# Alexander Yarmarkovich Isomics, Inc Core 2
# Randy L. Gollub MGH
+
# Stephen Aylward Kitware, Inc. Core 2
# Casey Goodlett SCI Institute
+
# Sebastien Barre Kitware, Inc. Core 2
# Alexandre Gouaillard Harvard Medical School
+
# Luis Ibanez Kitware, Inc. Core 2
# Sylvain Gouttard SCI Institute
+
# Karthik Krishnan Kitware, Inc. Core 2
# Jeffrey Grethe UC San Diego
+
# Curtis Lisle KnowledgeVis, LLC Core 2
# Nicole Grosland The University of Iowa
+
# Nathan Hageman UCLA Core 2
# Ozgur Guler ENT Medical University Innsbruck
+
# Jeffrey Grethe UCSD Core 2
# Daniel Haehn SPL-BWH
+
# Marco Ruiz UCSD Core 2
# Nathan Hageman UCLA
+
# Kevin Archie Washington University in St Louis Core 2
# Nobuhiko Hata Brigham and Womens Hospital
+
# Daniel Marcus Washington University in St Louis Core 2
# Kathryn Hayes Brigham and Womens Hospital
+
# Mikhail Milchenko Washington University in St Louis Core 2
# Heather Cody Hazlett University of North Carolina
+
# William Schroeder Kitware, Inc. Core 2,4
# Jaesung Hong Kyushu University
+
# Steve Pieper Isomics, Inc. Core 2,6
# Luis Ibanez Kitware, Inc.
+
# Sylvain Bouix BWH NA-MIC Core 3
# Chris Johnson EAB
+
# Marek Kubicki BWH NA-MIC Core 3
# Ron Kikinis SPL - BWH
+
# Doug Terry BWH NA-MIC Core 3
# Ivan Kolesov Georgia Tech
+
# Gabor Fichtinger Queens University Core 3
# Karthik Krishnan Kitware, Inc.
+
# Siddharth Vikal Queens University Core 3
# Marek Kubicki PNL_BWH
+
# H Jeremy Bockholt The Mind Research Network Core 3
# Curtis Lisle KnowledgeVis, LLC
+
# Mark Scully The Mind Research Network Core 3
# Yanling Liu SAIC-Frederick, Inc.
+
# Heather Cody Hazlett UNC Chapel Hill NA-MIC Core 3
# Zhexing Liu NIRAL, UNC
+
# Zhexing Liu UNC Chapel Hill NA-MIC Core 3
# Terry Lorber Isomics, Inc
+
# Clement Vachet UNC Chapel Hill NA-MIC Core 3
# Bill Lorensen EAB
+
# Sonia Pujol BWH NA-MIC Core 5
# Vincent Magnotta The University of Iowa
+
# Randy L. Gollub MGH Core 5
# Daniel Marcus Washington University
+
# Ron Kikinis BWH NA-MIC Core 7
# Katie Mastrogiacomo SPL - BWH
+
# Katie Mastrogiacomo BWH NA-MIC Core 7
# Cedric Mathieu UNC
+
# Morry Blumenfeld EAB
# Bjoern Menze MIT CSAIL
+
# Chris Johnson EAB
# Mikhail Milchenko Washington University in St Louis
+
# Bill Lorensen EAB
# James Miller GE Global Research
+
# Sandy Napel EAB
# Vandana Mohan Georgia Inst of Technology
+
# Fred Prior EAB
# kishore mosaliganti Harvard Medical School
+
# German Cavelier NIH
# Sandy Napel EAB
+
# David Chen NIH
# Marc Niethammer UNC Chapel Hill
+
# Dr. Terry S Yoo NIH
# Guy Nir Technion
+
# Michael Ackerman NIH
# Ipek Oguz UNC
+
# Zohara Cohen NIH
# Saikat Pal Stanford University
+
# Kevin Cleary Georgetown University Collaborator (Funded NCBC Collaboration)
# Steve Pieper Isomics, Inc.
+
# Dinggang Shen UNC Chapel Hill NA-MIC Collaborator (Funded NCBC Collaboration)
# Wendy Plesniak Brigham and Womens Hospital
+
# Nicole Grosland University of Iowa Collaborator (Funded NCBC Collaboration)
# Marcel Prastawa SCI Institute
+
# Vincent Magnotta University of Iowa Collaborator (Funded NCBC Collaboration)
# Fred Prior EAB
+
# Austin Ramme University of Iowa Collaborator (Funded NCBC Collaboration)
# Sonia Pujol Surgical Planning Lab, Brigham  Womens Hosp
+
# Kiran Shivanna University of Iowa Collaborator (Funded NCBC Collaboration)
# Vidya Rajagopalan Virginia Tech
+
# Vidya Rajagopalan Virginia Tech Collaborator (Funded NCBC Collaboration)
# Austin Ramme The University of Iowa
+
# Chris Wyatt Virginia Tech Collaborator (Funded NCBC Collaboration)
# Petter Risholm Brigham Womens Hospital
+
# Harish Doddi Stanford University Collaborator (NCBC Simbios)
# James Ross SPL-BWH
+
# Saikat Pal Stanford University Collaborator (NCBC Simbios)
# Marco Ruiz UCSD
+
# Kiyoyuki Chinzei AIST Collaborator
# Raul San Jose LMI-BWH
+
# Julien de Siebenthal BWH Collaborator
# Peter Savadjiev Brigham  Womens Hospital
+
# Andriy Fedorov BWH Collaborator
# William Schroeder Kitware, Inc.
+
# Daniel Haehn BWH Collaborator
# Mark Scully The Mind Research Network
+
# Nobuhiko Hata BWH Collaborator
# Madeleine Seeland LMI
+
# Kathryn Hayes BWH Collaborator
# Gregory Sharp MGH
+
# Wendy Plesniak BWH Collaborator
# Dinggang Shen UNC-Chapel Hill
+
# Petter Risholm BWH Collaborator
# Kiran Shivanna The University of Iowa
+
# James Ross BWH Collaborator
# Shantanu Singh The Ohio State University
+
# Raul San Jose BWH Collaborator
# Martin Styner University of North Carolina
+
# Peter Savadjiev BWH Collaborator
# Allen Tannenbaum Georgia Tech
+
# Madeleine Seeland BWH Collaborator
# Xiaodong Tao GE Global Research
+
# William Wells BWH Collaborator
# Doug Terry Psychiatry Neuroimaging Lab
+
# Carl-Fredrik Westin BWH Collaborator
# Clement Vachet UNC
+
# Nathan Wilson Cardiovascular Simulation, Inc. Collaborator
# Koen Van Leemput MIT CSAIL
+
# Ozgur Guler ENT Medical University Innsbruck Collaborator
# Archana Venkataraman MIT CSAIL
+
# Arnaud Gelas Harvard Medical School Collaborator
# Siddharth Vikal Queens University
+
# Alexandre Gouaillard Harvard Medical School Collaborator
# Xiaogang Wang Massachusetts Institute of Technology
+
# kishore mosaliganti Harvard Medical School Collaborator
# William Wells SPL-BWH
+
# Jaesung Hong Kyushu University Collaborator
# Carl-Fredrik Westin Brigham and Womens Hospital
+
# Luca Antiga Mario Negri Institute Collaborator
# Ross Whitaker SCI Institute
+
# Gregory Sharp MGH Collaborator
# Nathan Wilson Cardiovascular Simulation, Inc.
+
# Shantanu Singh Ohio State University Collaborator
# Chris Wyatt Virginia Tech
+
# Yanling Liu SAIC-Frederick, Inc. Collaborator
# Alexander Yarmarkovich Isomics, Inc
+
# Guy Nir Technion Collaborator
# Dr. Terry S Yoo DHHSNIHNLM
 

Latest revision as of 15:28, 9 December 2016

Home < AHM 2009

Back to Events

Introduction

This is the home page for the 2009 NA-MIC all hands meeting (AHM). NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.

For more information about the project weeks in general, click here.

For information about the January 2009 project week, see below or click here.

For information about Utah as a travel destination click here.

View of the City
The 2009 AHM, EAB and Project Week was held
January 5-9, 2009, in Salt Lake City, Utah.

Agenda

wireless connection: capital-ballroom, namic-ballroomB, namic-amethyst

Time Monday, January 5 Tuesday, January 6 Wednesday, January 7 Thursday, January 8 Friday, January 9
Project Activities in Capitol B-C Project Activities in Capitol B-C Project Activities in Capitol B-C AHM in A-B, EAB in Olympus B

Project Activities in Olympus A

Project Activities in Capitol B-C
7:30-8:00 Breakfast Breakfast Breakfast Breakfast
8:00-10:00 9:30 Core 1 and 2 PI closed session in Capitol A Project Work
8:00-9:00 How to use NITRC and slicer (Steve, Terry)

9:00-10:00 Using Batchmake and XNAT to process large studies (Stephen Aylward and Dan Marcus) in Amethyst 1

Project Work
8:00-9:00 Tutorial Review and Judging Amethyst 1

9:00-10:00 Particle Correspondence Breakout (Capital Ballroom A)

8:00 Introduction, Ron Kikinis

8:05 NA-MIC Highlights (Ross Whitaker)
Roadmap Projects
8:35: JHU/Queens (Gabor Fichtinger)
8:55: UNC (Heather Cody)
9:15: PNL (Marek Kubicki)
9.35: Mind Institute (Jeremy Bockolt)

Project Work
10:00-10:30 Core 1 and 2 PI closed session 10:30-11:30Automated GUI Testing for Slicer (Sebastien) Amethyst 1 Coffee Coffee 10:00 Project Review
10:30-12:00 Core 1 and 2 PI closed session Project Work Project Work

Collaborations
10:30: Iowa collaboration (Nicole Grosland)
10:45: Wake Forest collaboration (Chris Wyatt)
11:00: Georgetown U. collaboration (Kevin Cleary)
11:15: UNC collaboration (Dinggang Shen)
11:30: Mario Negri Collaboration (Luca Antiga)
11:45: Discussion

Project Work
12:00-1:00 Lunch Lunch
Lunch
Lunch Adjourn
1:00-3:00 Begin Project Activities: Introduce Projects and Participants DTI Discussion (Sonia, Randy, Others) 1 Project Work (Capital Ballroom A)
1:00-2:00 Python Modules (Luca Antiga)
2:00-3:00 VTK Widgets (Will Schroeder)

Tools and Tutorials
1:00-1:20 Slicer (Steve Pieper)
1:20-1:40 Interfacing with Slicer (Jim Miller)
1:40-2:00 Non-interactive tools (Stephen Aylward)
2:00-2:30 Training Core Update (Sonia Pujol) 2:30-3:00 Tutorial Contest: Presentations by the winners (Randy Gollub)

3:00-3:30 Coffee Coffee Coffee Coffee
3:00-5:00 3:30-4:30 Cell Segmentation (Alex G)
Project Work
Amethyst 1
Project Work
3:00-5:00 Meshing Tutorial (Nicole Grosland, Vincent Magnotta)
Iowa_Meshing_Tutorial
Amethyst 1
EAB
Olympus B
3:00-4:00 Discussion with NA-MIC Leadership
4:00-5:00 Closed Session
05:00-07:00 05:00-06:00 Meshing Breakout (Capital Ballroom A) 6:00 Optional: Beer at Murphy's (like last year)

Please note that there will be a Core 1&2 Site PI Retreat on the morning of Monday, January 5th. This is a closed session for Core 1&2 Site PIs, with no delegates. The topic is the competitive renewal.

Dates. Venue. Registration

Dates:

  • The All Hands Meeting and External Advisory Board Meeting will be held on Thursday, January 8th.
  • Project Activities will be held rest of the week between Monday, January 5th and Friday, January 9th.

Venue: The venue for the meeting is Marriot City Center, Salt Lake City, Utah Mariott City Center, Salt Lake City, Utah. (Floorplan). Please either call the hotel at 1-801-961-8700 or 1-866-961-8700 (toll free) or book online by December 4, 2008 using the code SCISCIA to get rooms at $139/night. Please note that we do need attendees to use this hotel in order to not incur additional charges for the use of conference rooms.

Registration: We are charging a registration fee to all participants ($200 for AHM only, and $450 for AHM+). The fee covers the costs of the facilities and food provided. In order to keep the fee low, we need to get a sufficient number of hotel nights by our participants. See above for more on this. Please click http://www.sci.utah.edu/namic2009/registration.html for online registration. This registration must be completed by December 12, 2008.

Connectivity We have three wireless access points at the AHM. Two of them are located in the capital ballroom. One is named capital-ballroom, the other is named capital-ballroom2. If one access point doesn't let you connect it is probably overloaded. In that case, please try connecting to the other one.

Attendees

This is the final list of all registered attendees for this meeting. 23:37, 3 February 2009 (UTC)

  1. Yi Gao Georgia Tech Core 1
  2. Ivan Kolesov Georgia Tech Core 1
  3. Vandana Mohan Georgia Tech Core 1
  4. Allen Tannenbaum Georgia Tech Core 1
  5. Michal Depa MIT CSAIL Core 1
  6. Polina Golland MIT CSAIL Core 1
  7. Bjoern Menze MIT CSAIL Core 1
  8. Koen Van Leemput MIT CSAIL Core 1
  9. Archana Venkataraman MIT CSAIL Core 1
  10. Xiaogang Wang MIT CSAIL Core 1
  11. Josh Cates SCI Institute Core 1
  12. Manasi Datar SCI Institute Core 1
  13. Guido Gerig SCI Institute Core 1
  14. Casey Goodlett SCI Institute Core 1
  15. Sylvain Gouttard SCI Institute Core 1
  16. Marcel Prastawa SCI Institute Core 1
  17. Ross Whitaker SCI Institute Core 1
  18. Cedric Mathieu UNC Chapel Hill NA-MIC Core 1
  19. Marc Niethammer UNC Chapel Hill NA-MIC Core 1
  20. Ipek Oguz UNC Chapel Hill NA-MIC Core 1
  21. Martin Styner UNC Chapel Hill NA-MIC Core 1
  22. Nicole Aucoin BWH NA-MIC Core 2
  23. James Miller GE Global Research NA-MIC Core 2
  24. Xiaodong Tao GE Global Research NA-MIC Core 2
  25. Terry Lorber Isomics, Inc Core 2
  26. Alexander Yarmarkovich Isomics, Inc Core 2
  27. Stephen Aylward Kitware, Inc. Core 2
  28. Sebastien Barre Kitware, Inc. Core 2
  29. Luis Ibanez Kitware, Inc. Core 2
  30. Karthik Krishnan Kitware, Inc. Core 2
  31. Curtis Lisle KnowledgeVis, LLC Core 2
  32. Nathan Hageman UCLA Core 2
  33. Jeffrey Grethe UCSD Core 2
  34. Marco Ruiz UCSD Core 2
  35. Kevin Archie Washington University in St Louis Core 2
  36. Daniel Marcus Washington University in St Louis Core 2
  37. Mikhail Milchenko Washington University in St Louis Core 2
  38. William Schroeder Kitware, Inc. Core 2,4
  39. Steve Pieper Isomics, Inc. Core 2,6
  40. Sylvain Bouix BWH NA-MIC Core 3
  41. Marek Kubicki BWH NA-MIC Core 3
  42. Doug Terry BWH NA-MIC Core 3
  43. Gabor Fichtinger Queens University Core 3
  44. Siddharth Vikal Queens University Core 3
  45. H Jeremy Bockholt The Mind Research Network Core 3
  46. Mark Scully The Mind Research Network Core 3
  47. Heather Cody Hazlett UNC Chapel Hill NA-MIC Core 3
  48. Zhexing Liu UNC Chapel Hill NA-MIC Core 3
  49. Clement Vachet UNC Chapel Hill NA-MIC Core 3
  50. Sonia Pujol BWH NA-MIC Core 5
  51. Randy L. Gollub MGH Core 5
  52. Ron Kikinis BWH NA-MIC Core 7
  53. Katie Mastrogiacomo BWH NA-MIC Core 7
  54. Morry Blumenfeld EAB
  55. Chris Johnson EAB
  56. Bill Lorensen EAB
  57. Sandy Napel EAB
  58. Fred Prior EAB
  59. German Cavelier NIH
  60. David Chen NIH
  61. Dr. Terry S Yoo NIH
  62. Michael Ackerman NIH
  63. Zohara Cohen NIH
  64. Kevin Cleary Georgetown University Collaborator (Funded NCBC Collaboration)
  65. Dinggang Shen UNC Chapel Hill NA-MIC Collaborator (Funded NCBC Collaboration)
  66. Nicole Grosland University of Iowa Collaborator (Funded NCBC Collaboration)
  67. Vincent Magnotta University of Iowa Collaborator (Funded NCBC Collaboration)
  68. Austin Ramme University of Iowa Collaborator (Funded NCBC Collaboration)
  69. Kiran Shivanna University of Iowa Collaborator (Funded NCBC Collaboration)
  70. Vidya Rajagopalan Virginia Tech Collaborator (Funded NCBC Collaboration)
  71. Chris Wyatt Virginia Tech Collaborator (Funded NCBC Collaboration)
  72. Harish Doddi Stanford University Collaborator (NCBC Simbios)
  73. Saikat Pal Stanford University Collaborator (NCBC Simbios)
  74. Kiyoyuki Chinzei AIST Collaborator
  75. Julien de Siebenthal BWH Collaborator
  76. Andriy Fedorov BWH Collaborator
  77. Daniel Haehn BWH Collaborator
  78. Nobuhiko Hata BWH Collaborator
  79. Kathryn Hayes BWH Collaborator
  80. Wendy Plesniak BWH Collaborator
  81. Petter Risholm BWH Collaborator
  82. James Ross BWH Collaborator
  83. Raul San Jose BWH Collaborator
  84. Peter Savadjiev BWH Collaborator
  85. Madeleine Seeland BWH Collaborator
  86. William Wells BWH Collaborator
  87. Carl-Fredrik Westin BWH Collaborator
  88. Nathan Wilson Cardiovascular Simulation, Inc. Collaborator
  89. Ozgur Guler ENT Medical University Innsbruck Collaborator
  90. Arnaud Gelas Harvard Medical School Collaborator
  91. Alexandre Gouaillard Harvard Medical School Collaborator
  92. kishore mosaliganti Harvard Medical School Collaborator
  93. Jaesung Hong Kyushu University Collaborator
  94. Luca Antiga Mario Negri Institute Collaborator
  95. Gregory Sharp MGH Collaborator
  96. Shantanu Singh Ohio State University Collaborator
  97. Yanling Liu SAIC-Frederick, Inc. Collaborator
  98. Guy Nir Technion Collaborator