AHM 2009

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Introduction

This is the home page for the 2009 NA-MIC all hands meeting (AHM). NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.

For more information about the project weeks in general, click here.

For information about the January 2009 project week, see below or click here.

For information about Utah as a travel destination click here.

View of the City
The 2009 AHM, EAB and Project Week will be held
January 5-9 2009, in Salt Lake City, Utah.

Agenda

wireless connection: capital-ballroom, namic-ballroomB, namic-amethyst

Time Monday, January 5 Tuesday, January 6 Wednesday, January 7 Thursday, January 8 Friday, January 9
Project Activities in Capitol B-C Project Activities in Capitol B-C Project Activities in Capitol B-C AHM in A-B, EAB in Olympus B

Project Activities in Olympus A

Project Activities in Capitol B-C
7:30-8:00 Breakfast Breakfast Breakfast Breakfast
8:00-10:00 9:30 Core 1 and 2 PI closed session in Capitol A Project Work
8:00-9:00 How to use NITRC and slicer (Steve, Terry)

9:00-10:00 Using Batchmake and XNAT to process large studies (Stephen Aylward and Dan Marcus) in Amethyst 1

Project Work
8:00-9:00 Tutorial Review and Judging Amethyst 1

9:00-10:00 Particle Correspondence Breakout (Capital Ballroom A)

8:00 Introduction, Ron Kikinis

8:05 NA-MIC Highlights (Ross Whitaker)
Roadmap Projects
8:35: JHU/Queens (Gabor Fichtinger)
8:55: UNC (Heather Cody)
9:15: PNL (Marek Kubicki)
9.35: Mind Institute (Jeremy Bockolt)

Project Work
10:00-10:30 Core 1 and 2 PI closed session 10:30-11:30Automated GUI Testing for Slicer (Sebastien) Amethyst 1 Coffee Coffee Coffee
10:30-12:00 Core 1 and 2 PI closed session Project Work Project Work

Collaborations
10:30: Iowa collaboration (Nicole Grosland)
10:45: Wake Forest collaboration (Chris Wyatt)
11:00: Georgetown U. collaboration (Kevin Cleary)
11:15: UNC collaboration (Dinggang Shen)
11:30: Mario Negri Collaboration (Luca Antiga)
11:45: Discussion

Project Work
12:00-1:00 Lunch Lunch
Lunch
Lunch Adjourn
1:00-3:00 Begin Project Activities: Introduce Projects and Participants DTI Discussion (Sonia, Randy, Others) 1 Project Work (Capital Ballroom A)
1:00-2:00 Python Modules (Luca Antiga)
2:00-3:00 VTK Widgets (Will Schroeder)

Tools and Tutorials
1:00-1:20 Slicer (Steve Pieper)
1:20-1:40 Plug-ins for Slicer (Jim Miller)
1:40-2:00 Non-interactive tools (Stephen Aylward)
2:00-3:00 Tutorial Contest: Presentations by the winners (Randy Gollub)

3:00-3:30 Coffee Coffee Coffee Coffee
3:00-5:00 3:30-4:30 Cell Segmentation (Alex G)
Project Work
Amethyst 1
Project Work
3:00-5:00 Meshing Tutorial (Nicole Grosland, Vincent Magnotta)
Iowa_Meshing_Tutorial
Amethyst 1
EAB
Olympus B
3:00-4:00 Discussion with NA-MIC Leadership
4:00-5:00 Closed Session
05:00-07:00 05:00-06:00 Meshing Breakout (Capital Ballroom A) 6:00 Optional: Beer at Murphy's (like last year)

Please note that there will be a Core 1&2 Site PI Retreat on the morning of Monday, January 5th. This is a closed session for Core 1&2 Site PIs, with no delegates. The topic is the competitive renewal.

Dates. Venue. Registration

Dates:

  • The All Hands Meeting and External Advisory Board Meeting will be held on Thursday, January 8th.
  • Project Activities will be held rest of the week between Monday, January 5th and Friday, January 9th.

Venue: The venue for the meeting is Marriot City Center, Salt Lake City, Utah Mariott City Center, Salt Lake City, Utah. (Floorplan). Please either call the hotel at 1-801-961-8700 or 1-866-961-8700 (toll free) or book online by December 4, 2008 using the code SCISCIA to get rooms at $139/night. Please note that we do need attendees to use this hotel in order to not incur additional charges for the use of conference rooms.

Registration: We are charging a registration fee to all participants ($200 for AHM only, and $450 for AHM+). The fee covers the costs of the facilities and food provided. In order to keep the fee low, we need to get a sufficient number of hotel nights by our participants. See above for more on this. Please click http://www.sci.utah.edu/namic2009/registration.html for online registration. This registration must be completed by December 12, 2008.

Connectivity We have three wireless access points at the AHM. Two of them are located in the capital ballroom. One is named capital-ballroom, the other is named capital-ballroom2. If one access point doesn't let you connect it is probably overloaded. In that case, please try connecting to the other one.

Attendees

Please follow http://www.sci.utah.edu/namic2009/registration.html to complete your online registration. The organizers will periodically publish the list of registered attendees in the space below. Attendees should NOT add their names in this section. This list is a snapshop as of 01:46, 23 December 2008 (UTC)

  1. Michael Ackerman NA-MIC All Hands Meeting National Library of Medicine at NIH
  2. Luca Antiga NA-MIC All Hands Meeting and Project Week 2009 Mario Negri Institute
  3. Kevin Archie NA-MIC All Hands Meeting and Project Week 2009 Washington University
  4. Nicole Aucoin NA-MIC All Hands Meeting and Project Week 2009 BWH
  5. Stephen Aylward NA-MIC All Hands Meeting and Project Week 2009 Kitware
  6. Sebastien Barre NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
  7. Morry Blumenfeld NA-MIC All Hands Meeting EAB
  8. H Jeremy Bockholt NA-MIC All Hands Meeting and Project Week 2009 The Mind Research Network
  9. Sylvain Bouix NA-MIC All Hands Meeting and Project Week 2009 PNL
  10. Josh Cates NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
  11. German Cavelier NA-MIC All Hands Meeting NIH-NIMH
  12. Kiyoyuki Chinzei NA-MIC All Hands Meeting and Project Week 2009 AIST
  13. Kevin Cleary NA-MIC All Hands Meeting Georgetown University
  14. Manasi Datar NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
  15. Michal Depa NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
  16. Harish Doddi NA-MIC All Hands Meeting and Project Week 2009 Stanford University
  17. Andriy Fedorov NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
  18. Gabor Fichtinger NA-MIC All Hands Meeting Queens Univ
  19. Yi Gao NA-MIC All Hands Meeting and Project Week 2009
  20. Arnaud Gelas NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
  21. Guido Gerig NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
  22. Polina Golland NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
  23. Randy L. Gollub NA-MIC All Hands Meeting and Project Week 2009 MGH
  24. Casey Goodlett NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
  25. Alexandre Gouaillard NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
  26. Sylvain Gouttard NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
  27. Jeffrey Grethe NA-MIC All Hands Meeting and Project Week 2009 UC San Diego
  28. Nicole Grosland NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
  29. Daniel Haehn NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
  30. Nathan Hageman NA-MIC All Hands Meeting and Project Week 2009 UCLA
  31. Nobuhiko Hata NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
  32. Kathryn Hayes NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
  33. Heather Cody Hazlett NA-MIC All Hands Meeting University of North Carolina
  34. Jaesung Hong NA-MIC All Hands Meeting and Project Week 2009 Kyushu University
  35. Luis Ibanez NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
  36. Chris Johnson NA-MIC All Hands Meeting and Project Week 2009 EAB
  37. Ron Kikinis NA-MIC All Hands Meeting and Project Week 2009 SPL - BWH
  38. Ivan Kolesov NA-MIC All Hands Meeting and Project Week 2009 Georgia Tech
  39. Karthik Krishnan NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
  40. Marek Kubicki NA-MIC All Hands Meeting and Project Week 2009 PNL_BWH
  41. Curtis Lisle NA-MIC All Hands Meeting and Project Week 2009 KnowledgeVis, LLC
  42. Yanling Liu NA-MIC All Hands Meeting and Project Week 2009 SAIC-Frederick, Inc.
  43. Zhexing Liu NA-MIC All Hands Meeting and Project Week 2009 NIRAL, UNC
  44. Terry Lorber NA-MIC All Hands Meeting and Project Week 2009 Isomics, Inc
  45. Bill Lorensen NA-MIC All Hands Meeting and Project Week 2009 EAB
  46. Vincent Magnotta NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
  47. Daniel Marcus NA-MIC All Hands Meeting and Project Week 2009 Washington University
  48. Katie Mastrogiacomo NA-MIC All Hands Meeting and Project Week 2009 SPL - BWH
  49. Cedric Mathieu NA-MIC All Hands Meeting and Project Week 2009 UNC
  50. Bjoern Menze NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
  51. Mikhail Milchenko NA-MIC All Hands Meeting Washington University in St Louis
  52. James Miller NA-MIC All Hands Meeting and Project Week 2009
  53. Vandana Mohan NA-MIC All Hands Meeting and Project Week 2009 Georgia Inst of Technology
  54. kishore mosaliganti NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
  55. Sandy Napel NA-MIC All Hands Meeting EAB
  56. Marc Niethammer NA-MIC All Hands Meeting and Project Week 2009 UNC Chapel Hill
  57. Guy Nir NA-MIC All Hands Meeting and Project Week 2009 Technion
  58. Ipek Oguz NA-MIC All Hands Meeting and Project Week 2009 UNC
  59. Saikat Pal NA-MIC All Hands Meeting and Project Week 2009 Stanford University
  60. Steve Pieper NA-MIC All Hands Meeting and Project Week 2009 Isomics, Inc.
  61. Marcel Prastawa NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
  62. Fred Prior NA-MIC All Hands Meeting EAB
  63. Sonia Pujol NA-MIC All Hands Meeting and Project Week 2009 Surgical Planning Lab, Brigham Womens Hosp
  64. Vidya Rajagopalan NA-MIC All Hands Meeting and Project Week 2009 Virginia Tech
  65. Austin Ramme NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
  66. Petter Risholm NA-MIC All Hands Meeting and Project Week 2009 Brigham Womens Hospital
  67. James Ross NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
  68. Marco Ruiz NA-MIC All Hands Meeting and Project Week 2009 UCSD
  69. Raul San Jose NA-MIC All Hands Meeting and Project Week 2009 LMI-BWH
  70. Peter Savadjiev NA-MIC All Hands Meeting and Project Week 2009 Brigham Womens Hospital
  71. William Schroeder NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
  72. Mark Scully NA-MIC All Hands Meeting and Project Week 2009 The Mind Research Network
  73. Madeleine Seeland NA-MIC All Hands Meeting and Project Week 2009 LMI
  74. Gregory Sharp NA-MIC All Hands Meeting and Project Week 2009 MGH
  75. Dinggang Shen NA-MIC All Hands Meeting UNC-Chapel Hill
  76. Kiran Shivanna NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
  77. Shantanu Singh NA-MIC All Hands Meeting and Project Week 2009 The Ohio State University
  78. Martin Styner NA-MIC All Hands Meeting and Project Week 2009 University of North Carolina
  79. Allen Tannenbaum NA-MIC All Hands Meeting and Project Week 2009 Georgia Tech
  80. Xiaodong Tao NA-MIC All Hands Meeting and Project Week 2009 GE Global Research
  81. Doug Terry NA-MIC All Hands Meeting and Project Week 2009 Psychiatry Neuroimaging Lab
  82. Clement Vachet NA-MIC All Hands Meeting and Project Week 2009 UNC
  83. Koen Van Leemput NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
  84. Archana Venkataraman NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
  85. Siddharth Vikal NA-MIC All Hands Meeting and Project Week 2009 Queens University
  86. William Wells NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
  87. Carl-Fredrik Westin NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
  88. Ross Whitaker NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
  89. Nathan Wilson NA-MIC All Hands Meeting Cardiovascular Simulation, Inc.
  90. Chris Wyatt NA-MIC All Hands Meeting
  91. Alexander Yarmarkovich NA-MIC All Hands Meeting and Project Week 2009 ISOMIC
  92. Dr. Terry S Yoo NA-MIC All Hands Meeting DHHSNIHNLM