BIRN Booth SFN 2005

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Home < BIRN Booth SFN 2005

Move-in Times

  • Wednesday Nov 9: 12:00 pm - 4:30 pm
  • Thursday Nov 10: 8:00 am - 4:30 pm
  • Friday Nov 11: 8:00 am - 6:00 pm


BIRN Booth exhibit times

Sun-Nov 13 Mon-Nov 14 Tue-Nov 15 Wed-Nov 16
7:00-9:30 am Daily Setup Daily Setup Daily Setup Daily Setup
9:30-11:30 am BIRN-CC BIRN-CC BIRN-CC Test Bed: Function
11:30-1:30 pm Test Bed: Mouse Test Bed: Function Test Bed: Morphometry Test Bed: Mouse
1:30-3:30 pm Test Bed: Function Test Bed: Morphometry Test Bed: Mouse Test Bed: Morphometry
3:30-5:00 pm Test Bed: Morphometry Test Bed: Mouse Test Bed: Function BIRN-CC


Demonstration Targets for each testbed

**** Morph BIRN booth support ****
  Sunday 3:30-5pm: Dan Marcus, Tim Olsen, Jorge Jovicich, Anthony Kolasny
  Monday 1:30-3:30pm:  Christine Fennema-Notestine, Jorge Jovicich
  Tuesday 11:30am-1:30pm: Anthony Kolasny, Jorge Jovicich
  Wednesday 1:30-3:30pm:  Christine Fennema-Notestine, Jorge Jovicich
 


  • Function BIRN
    • Phase I Datasets and that interface
    • HID/GUI demos
    • QA phantom methods
    • XML schema/usefulness
      • XML-enabled tools
    • E-prime files from Phase I


  • Mouse BIRN
    • Tools:
      • A version of a mouse BIRN atlasing environment
      • Pipelines to process and atlas MRI data acquired at CIT or Duke
    • Data collection methodology:
      • MRI
      • Histology
      • Nissl
      • High resolution
    • Data:
      • Data from one of the mouse models of neurological disease: Exact data set TBD
      • Some Gensat data registered to mouse BIRN atlas
      • 3D Mouse Brain data set
      • 3D Paxinos MRI atlas
      • Some microarray/anatomical data
    • Data Management:
      • Developmental ontology
      • Subcellular anatomy ontology
      • Genenetwork Search/get commands
    • Workflows/tutorials/other documentation:
      • Tutorial of how to register Gensat data (or similar) using SmartAtlas
      • Tutorial of how to process 3D MRI volumes (from Caltech and Duke) and register them to the mouse BIRN atlas
      • Document with list of mouse BIRN publications to date


  • BIRN CC