Difference between revisions of "BRAINS Automated Pipeline"

From NAMIC Wiki
Jump to: navigation, search
Line 21: Line 21:
  
 
'''Links:'''
 
'''Links:'''
[http://www.psychiatry.uiowa.edu University of Iowa Department of Psychiatry]
+
*[http://www.psychiatry.uiowa.edu University of Iowa Department of Psychiatry]
[http://mri.radiology.uiowa.edu University of Iowa MRI Center]
+
*[http://mri.radiology.uiowa.edu University of Iowa MRI Center]
[http://www.themindinstiute.org The MIND Institute]
+
*[http://www.themindinstitute.org The MIND Institute]
  
 
'''Papers:'''
 
'''Papers:'''

Revision as of 13:35, 3 July 2007

Home < BRAINS Automated Pipeline

Objective:

Develop tools to eliminate the need for manual intervention for the analysis of brain morphology using MR images. We currently have a semiautomated pipeline that includes the following steps

  • AC-PC Alignment of T1 Volume
  • Co-registration of T2 weighted images to AC-PC Aligned T1
  • Bias Field Correction
  • Tissue Classification
  • Talairach Atlas Segmentation
  • Neural Network Segmentation
  • Surface Generation
  • Measurements of Volumetric and Surface Data

Progress:


Key Investigators:

  • University of Iowa: Vincent Magnotta, Hans Johnson, Nancy Andreasen
  • The MIND Institute: Jeremy Bockholt


Links:

Papers: