BRAINS Automated Pipeline

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Objective:

Develop tools to eliminate the need for manual intervention for the analysis of brain morphology using MR images. We currently have a semiautomated pipeline that includes the following steps

  • AC-PC Alignment of T1 Volume
  • Co-registration of T2 weighted images to AC-PC Aligned T1
  • Bias Field Correction
  • Tissue Classification
  • Talairach Atlas Segmentation
  • Neural Network Segmentation
  • Surface Generation
  • Measurements of Volumetric and Surface Data

Progress:


Key Investigators:

  • University of Iowa: Vincent Magnotta, Hans Johnson, Nancy Andreasen
  • The MIND Institute: Jeremy Bockholt


Links: University of Iowa Department of Psychiatry University of Iowa MRI Center The MIND Institute

Papers: