Difference between revisions of "DBP1:Dartmouth"

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__NOTOC__
 
__NOTOC__
This page is under construction. Click [[DBP:Dartmouth|here]] for the older version.
 
 
= Overview of Dartmouth DBP 1 =
 
= Overview of Dartmouth DBP 1 =
  
A brief overview of the Dartmouth's driving biological problem goes here.  This should not be much longer than a paragraph.  Remember that people visiting your site want to be able to understand very quickly what you're all about and then they want to jump into your site's projects. The projects below are organized into a two column table: the left column is for representative images and the right column is for project overviews.  The number of rows corresponds to the number of projects at your site.  Put the most interesting and relevant projects at the top of the table.  You do not need to organize the table according to subject matter (i.e. do not group all segmentation projects together and all DWI projects together).
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The Dartmouth Driving Biological Project examines DW-MRI and fMRI data in patients with schizophrenia to determine association with brain activation during memory tasks.
 +
 
 +
For more introductory information, follow this [[DBP:Dartmouth|link]].
  
 
= Dartmouth Projects =
 
= Dartmouth Projects =
  
{|
+
{| cellpadding="10" style="text-align:left;"
| style="width:10%" | [[Image:NAMIC callosum tracts prelim.jpg|thumb|left|200px]]
+
 
| style="width:90%" |
+
| style="width:15%" | [[Image:NAMIC callosum tracts prelim.jpg|200px]]
 +
| style="width:85%" |
  
 
== [[Projects:CorpusCallosumFiberTractography|Corpus Callosum Fiber Tractography]] ==
 
== [[Projects:CorpusCallosumFiberTractography|Corpus Callosum Fiber Tractography]] ==
  
Here we write a very brief description of Project 1.  Notice a representative image is chosen from the project and places in the left column. [[Projects:CorpusCallosumFiberTractography|More...]]
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The goal of this project is to examine the integrity of fibers in the corpus callosum in patients with schizophrenia and determine whether this is associated with brain activation during memory tasks. [[Projects:CorpusCallosumFiberTractography|More...]]
 
 
<font color="red">'''New: '''</font> Here we give something new and exciting about the project.  The most recent publication on this project is very appropriate for this slot.
 
 
 
|-
 
 
 
| | [[Image:FACorpus.png|thumb|left|200px]]
 
| |
 
 
 
== [[Projects:CorpusCallosumRegionalFAAnalysis|Corpus Callosum Regional FA Analysis]] ==
 
 
 
Here we write a very brief description of Project 2.  Notice a representative image is chosen from the project and places in the left column. [[Projects:CorpusCallosumRegionalFAAnalysis|More...]]
 
 
 
<font color="red">'''New: '''</font> Here we give something new and exciting about the project.  The most recent publication on this project is very appropriate for this slot.
 
 
 
|-
 
 
 
| | [[Image:CaseD00724 bothROIs0001.jpg|thumb|left|200px]]
 
| |
 
 
 
== [[Projects:FractionalAnisotropyOfTheCorpusCallosumAndAnteriorCommissure|Fractional Anisotropy of the Corpus Callosum and Anterior Commissure]] ==
 
  
Here we write a very brief description of Project 3. Notice a representative image is chosen from the project and places in the left column. [[Projects:FractionalAnisotropyOfTheCorpusCallosumAndAnteriorCommissure|More...]]
+
<font color="red">'''New: '''</font> Salat D.H., Lee S.Y., van der Kouwe A.J., Greve D.N., Fischl B., Rosas H.D.  
 +
Age-associated alterations in cortical gray and white matter signal intensity and gray to white matter contrast. Neuroimage. 2009 Oct 15;48(1):21-8
  
<font color="red">'''New: '''</font> Here we give something new and exciting about the project.  The most recent publication on this project is very appropriate for this slot.
 
  
 
|-
 
|-
  
| | [[Image:NAMIC UncinateFasiculus prelim.jpg|thumb|left|200px]]
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| | [[Image:NAMIC UncinateFasiculus prelim.jpg|200px]]
 
| |
 
| |
  
 
== [[Projects:FractionalAnisotrophyInTheUncinateFasciculus|Fractional Anisotropy in the Uncinate Fasciculus]] ==
 
== [[Projects:FractionalAnisotrophyInTheUncinateFasciculus|Fractional Anisotropy in the Uncinate Fasciculus]] ==
  
Here we write a very brief description of Project 4. Notice a representative image is chosen from the project and places in the left column. [[Projects:FractionalAnisotrophyInTheUncinateFasciculus|More...]]
+
Our objective is to measure the FA in the uncinate fasciculus in patients with schizophrenia. This project is based on the methods published by Kubicki et al. and extends that work by including a bipolar disorder control group, and determining whether there is an association between FA and cognitive functioning and symptoms in the patient groups. [[Projects:FractionalAnisotrophyInTheUncinateFasciculus|More...]]
 
 
<font color="red">'''New: '''</font> Here we give something new and exciting about the project.  The most recent publication on this project is very appropriate for this slot.
 
  
 +
<font color="red">'''New: '''</font> AHM 2007: Training on fiber tractography in Slicer with Sylvain Bouix that we can apply to this project as well as investigation of other fibre tracts such as the cingulate bundle.
  
 
|-
 
|-
  
| | [[Image:Placeholder.jpg|thumb|left|200px]]
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| | [[Image:DartmouthPathOfInterest.png|200px]]
 
| |
 
| |
  
 
== [[Projects:IntegrityOfFrontoTemporalCircuitry|Integrity of Fronto-Temporal Circuitry]] ==
 
== [[Projects:IntegrityOfFrontoTemporalCircuitry|Integrity of Fronto-Temporal Circuitry]] ==
  
Here we write a very brief description of Project 5.  Notice a representative image is chosen from the project and places in the left column. [[Projects:IntegrityOfFrontoTemporalCircuitry|More...]]
+
Our objective is to develop methodology that will permit investigators to specify functional MRI regional of interests (fROI) and determine the optimal white matter pathways between the fROIs based on DTI. [[Projects:IntegrityOfFrontoTemporalCircuitry|More...]]
 
 
<font color="red">'''New: '''</font> Here we give something new and exciting about the project.  The most recent publication on this project is very appropriate for this slot.
 
 
 
|-
 
 
 
| | [[Image:Placeholder.jpg|thumb|left|200px]]
 
| |
 
 
 
== [[Projects:DTIPathOfInterest|DTI Path of Interest]] ==
 
 
 
Here we write a very brief description of Project 6.  Notice a representative image is chosen from the project and places in the left column. [[Projects:DTIPathOfInterest|More...]]
 
  
<font color="red">'''New: '''</font> Here we give something new and exciting about the project. The most recent publication on this project is very appropriate for this slot.
+
<font color="red">'''New: '''</font> AHM 2007: John West had training session with Dennis Jen on new version of POI algorithm. Worked together to read new Dartmouth 3T Philips Data. Further work ongoing to integrate POI into Slicer 3.
  
 
|-
 
|-
  
| | [[Image:EPIT1Registration.png|thumb|left|200px]]
+
| | [[Image:EPIT1Registration.png|height="200px"]]
 
| |
 
| |
  
 
== [[Projects:NonRigidEPIRegistration|Non-Rigid EPI Registration]] ==
 
== [[Projects:NonRigidEPIRegistration|Non-Rigid EPI Registration]] ==
  
Here we write a very brief description of Project 7.  Notice a representative image is chosen from the project and places in the left column. [[Projects:NonRigidEPIRegistration|More...]]
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Our Objective is to identify optimal ITK method and parameter settings for non-rigid intrasubject registration of T2 EPI, the raw building block images of DTI, to T1 conventional images. Provide software devliverable. [[Projects:NonRigidEPIRegistration|More...]]
  
<font color="red">'''New: '''</font> Here we give something new and exciting about the project.  The most recent publication on this project is very appropriate for this slot.
+
<font color="red">'''New: '''</font> Project Week Results: [[Engineering:Project:Non-rigid_EPI_registration|Jan 2006]]
  
 
|-
 
|-
  
| | [[Image:Rawpval rc back min.png|thumb|left|200px]]
+
| | [[Image:ShapeAnalysisOverviewStatsHippo05.jpg|200px]]
| |
 
 
 
== [[Projects:ShapeAnalysisOfCaudateAndCorpusCallosum|Shape Analysis of the Caudate and Corpus Callosum]] ==
 
 
 
Here we write a very brief description of Project 8.  Notice a representative image is chosen from the project and places in the left column. [[Projects:ShapeAnalysisOfCaudateAndCorpusCallosum|More...]]
 
 
 
<font color="red">'''New: '''</font> Here we give something new and exciting about the project.  The most recent publication on this project is very appropriate for this slot.
 
 
 
|-
 
 
 
| | [[Image:ShapeAnalysisOverviewStatsHippo05.jpg|thumb|left|200px]]
 
 
| |
 
| |
  
 
== [[Projects:ShapeAnalysisOfHippocampus|Shape Analysis of the Hippocampus]] ==
 
== [[Projects:ShapeAnalysisOfHippocampus|Shape Analysis of the Hippocampus]] ==
  
Here we write a very brief description of Project 8.  Notice a representative image is chosen from the project and places in the left column. [[Projects:ShapeAnalysisOfHippocampus|More...]]
+
Our objective is to examine hippocampal shape in patients with schizophrenia and healthy controls. [[Projects:ShapeAnalysisOfHippocampus|More...]]
  
<font color="red">'''New: '''</font> Here we give something new and exciting about the project. The most recent publication on this project is very appropriate for this slot.
+
<font color="red">'''New: '''</font> Styner M, Lieberman JA, McClure RK, Weinberger DR, Jones DW, Gerig G.: Morphometric analysis of lateral ventricles in schizophrenia and healthy controls regarding genetic and disease-specific factors, Proc Natl Acad Sci USA. 2005 Mar 29;102(13):4872-7. Epub 2005 Mar 16.
  
 
|-
 
|-
  
| | [[Image:Placeholder.jpg|thumb|left|200px]]
+
| | [[Image:Apathy.png|200px]]
 
| |
 
| |
  
 
== [[Projects:NeuralSubstratesOfApathy|Neural Substrates of Apathy]] ==
 
== [[Projects:NeuralSubstratesOfApathy|Neural Substrates of Apathy]] ==
  
Here we write a very brief description of Project 8.  Notice a representative image is chosen from the project and places in the left column. [[Projects:NeuralSubstratesOfApathy|More...]]
+
We recently observed reduced volume of the frontal lobe in patients with schizophrenia having high levels of apathy (link to journal below). In the present investigation we are extending our study of the structural correlates of apathy in schizophrenia using the NAMIC toolkit with an emphasis on basal ganglia. [[Projects:NeuralSubstratesOfApathy|More...]]
 
 
<font color="red">'''New: '''</font> Here we give something new and exciting about the project.  The most recent publication on this project is very appropriate for this slot.
 
 
 
|-
 
 
 
| | [[Image:Placeholder.jpg|thumb|left|200px]]
 
| |
 
 
 
== [[Projects:MorphometryFrontalCircuitry|Morphometry Frontal Circuitry]] ==
 
 
 
Here we write a very brief description of Project 8.  Notice a representative image is chosen from the project and places in the left column. [[Projects:MorphometryFrontalCircuitry|More...]]
 
  
<font color="red">'''New: '''</font> Here we give something new and exciting about the project.  The most recent publication on this project is very appropriate for this slot.
+
<font color="red">'''New: '''</font> Feb 22, 2006: Sylvain Bouix to visit Dartmouth.
  
 
|-
 
|-
  
| | [[Image:NAMIC prelim n2bk results good.jpg|thumb|left|200px]]
+
| | [[Image:NAMIC prelim n2bk results good.jpg|200px]]
 
| |
 
| |
  
 
== [[Projects:NeuralSubstratesOfWorkingMemoryInSchizophrenia|Neural Substrates of Working Memory in Schizophrenia]] ==
 
== [[Projects:NeuralSubstratesOfWorkingMemoryInSchizophrenia|Neural Substrates of Working Memory in Schizophrenia]] ==
  
Here we write a very brief description of Project 8. Notice a representative image is chosen from the project and places in the left column. [[Projects:NeuralSubstratesOfWorkingMemoryInSchizophrenia|More...]]
+
This project assesses working memory using an auditory verbal version of the n-back task paradigm. Three conditions are presented in blocks in counterbalanced order with increasing working memory load demands (0-, 1-, 2- and 3-back). [[Projects:NeuralSubstratesOfWorkingMemoryInSchizophrenia|More...]]
  
<font color="red">'''New: '''</font> Here we give something new and exciting about the project.  The most recent publication on this project is very appropriate for this slot.
+
<font color="red">'''New: '''</font> December 20, 2005: Marek Kubicki visit to Dartmouth.
  
 
|-
 
|-
  
| | [[Image:NAMIC AVrecog prelim results.jpg|thumb|left|200px]]
+
| | [[Image:NAMIC AVrecog prelim results.jpg|200px]]
 
| |
 
| |
  
 
== [[Projects:BrainActivationDuringContinuousVerbalEncodingAndRecognitionTaskInSchizophrenia|Brain Activation during Continuous Verbal Encoding and Recognition Task in Schizophrenia]] ==
 
== [[Projects:BrainActivationDuringContinuousVerbalEncodingAndRecognitionTaskInSchizophrenia|Brain Activation during Continuous Verbal Encoding and Recognition Task in Schizophrenia]] ==
  
Here we write a very brief description of Project 8.  Notice a representative image is chosen from the project and places in the left column. [[Projects:BrainActivationDuringContinuousVerbalEncodingAndRecognitionTaskInSchizophrenia|More...]]
+
This project employs an event-related auditory verbal episodic memory probe targeting medial temporal and DLPFC circuitry. The task uses a continuous performance format where concrete nouns are presented initially as new items. Words are then repeated after short or long intervals and the participant is required to make a new/old distinction. This design permits analysis of both encoding and recognition processes. [[Projects:BrainActivationDuringContinuousVerbalEncodingAndRecognitionTaskInSchizophrenia|More...]]
 
 
<font color="red">'''New: '''</font> Here we give something new and exciting about the project.  The most recent publication on this project is very appropriate for this slot.
 
 
 
|-
 
 
 
| | [[Image:Placeholder.jpg|thumb|left|200px]]
 
| |
 
 
 
== [[Projects:FrontoTemporalConnectivityInSchizophreniaDuringSemanticMemory|Fronto-Temporal Connectivity in Schizophrenia during Semantic Memory]] ==
 
 
 
Here we write a very brief description of Project 8.  Notice a representative image is chosen from the project and places in the left column. [[Projects:FrontoTemporalConnectivityInSchizophreniaDuringSemanticMemory|More...]]
 
  
<font color="red">'''New: '''</font> Here we give something new and exciting about the project.  The most recent publication on this project is very appropriate for this slot.
+
<font color="red">'''New: '''</font> December 20, 2005: Marek Kubicki visit to Dartmouth.
  
 
|}
 
|}

Latest revision as of 19:46, 27 August 2009

Home < DBP1:Dartmouth

Back to NA-MIC DBP 1

Overview of Dartmouth DBP 1

The Dartmouth Driving Biological Project examines DW-MRI and fMRI data in patients with schizophrenia to determine association with brain activation during memory tasks.

For more introductory information, follow this link.

Dartmouth Projects

NAMIC callosum tracts prelim.jpg

Corpus Callosum Fiber Tractography

The goal of this project is to examine the integrity of fibers in the corpus callosum in patients with schizophrenia and determine whether this is associated with brain activation during memory tasks. More...

New: Salat D.H., Lee S.Y., van der Kouwe A.J., Greve D.N., Fischl B., Rosas H.D. Age-associated alterations in cortical gray and white matter signal intensity and gray to white matter contrast. Neuroimage. 2009 Oct 15;48(1):21-8


NAMIC UncinateFasiculus prelim.jpg

Fractional Anisotropy in the Uncinate Fasciculus

Our objective is to measure the FA in the uncinate fasciculus in patients with schizophrenia. This project is based on the methods published by Kubicki et al. and extends that work by including a bipolar disorder control group, and determining whether there is an association between FA and cognitive functioning and symptoms in the patient groups. More...

New: AHM 2007: Training on fiber tractography in Slicer with Sylvain Bouix that we can apply to this project as well as investigation of other fibre tracts such as the cingulate bundle.

DartmouthPathOfInterest.png

Integrity of Fronto-Temporal Circuitry

Our objective is to develop methodology that will permit investigators to specify functional MRI regional of interests (fROI) and determine the optimal white matter pathways between the fROIs based on DTI. More...

New: AHM 2007: John West had training session with Dennis Jen on new version of POI algorithm. Worked together to read new Dartmouth 3T Philips Data. Further work ongoing to integrate POI into Slicer 3.

height="200px"

Non-Rigid EPI Registration

Our Objective is to identify optimal ITK method and parameter settings for non-rigid intrasubject registration of T2 EPI, the raw building block images of DTI, to T1 conventional images. Provide software devliverable. More...

New: Project Week Results: Jan 2006

ShapeAnalysisOverviewStatsHippo05.jpg

Shape Analysis of the Hippocampus

Our objective is to examine hippocampal shape in patients with schizophrenia and healthy controls. More...

New: Styner M, Lieberman JA, McClure RK, Weinberger DR, Jones DW, Gerig G.: Morphometric analysis of lateral ventricles in schizophrenia and healthy controls regarding genetic and disease-specific factors, Proc Natl Acad Sci USA. 2005 Mar 29;102(13):4872-7. Epub 2005 Mar 16.

Apathy.png

Neural Substrates of Apathy

We recently observed reduced volume of the frontal lobe in patients with schizophrenia having high levels of apathy (link to journal below). In the present investigation we are extending our study of the structural correlates of apathy in schizophrenia using the NAMIC toolkit with an emphasis on basal ganglia. More...

New: Feb 22, 2006: Sylvain Bouix to visit Dartmouth.

NAMIC prelim n2bk results good.jpg

Neural Substrates of Working Memory in Schizophrenia

This project assesses working memory using an auditory verbal version of the n-back task paradigm. Three conditions are presented in blocks in counterbalanced order with increasing working memory load demands (0-, 1-, 2- and 3-back). More...

New: December 20, 2005: Marek Kubicki visit to Dartmouth.

NAMIC AVrecog prelim results.jpg

Brain Activation during Continuous Verbal Encoding and Recognition Task in Schizophrenia

This project employs an event-related auditory verbal episodic memory probe targeting medial temporal and DLPFC circuitry. The task uses a continuous performance format where concrete nouns are presented initially as new items. Words are then repeated after short or long intervals and the participant is required to make a new/old distinction. This design permits analysis of both encoding and recognition processes. More...

New: December 20, 2005: Marek Kubicki visit to Dartmouth.