DBP2:Harvard:Structural Pipeline Roadmap

Roadmap

• Structural Pipeline, initial focus
  • Bias field correction missing (independent of EM) – slicer module/ITK
  • Intensity normalization missing – slicer module/ITK
  • Skull stripping (PNL currently using FSL BET) - slicer module/ITK
  • EMSegmentation (still some issues with slicer3 module vs slicer2 -- being worked on, ball in Sylvain's court)
  • Unbiased atlas creation (several people working on it, no finished tool yet) – on-going work

To do

• Assign owners to tasks
• Define schedule

Staffing Plan

• Clement is the DBP resource charged with adapting the tools in the NA-MIC Kit to the DBP needs
• Martin is the algorithm core contact
• Jim is the engineering core contact

Schedule

• xx/xx/2007 - White matter/gray matter segmentation of the young brain using UNC technique as a Slicer3 module

Team and Institute

• DBP PI:
• NA-MIC Engineering Contact: Brad Davis, Kitware
• NA-MIC Algorithms Contact: Polina Golland MIT