Events:August2008XNATDesktop

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Plans for the Integration of XNAT desktop and Slicer

Visit of XNAT team to Boston

  • Tentative Date: August 21-22nd
  • Location: 1249 Boylston Street, 2nd floor demo room Directions to 1249 Boylston
  • Agenda/Goals
    • Attempt to get base use case worked through
      • upload files to XND
      • query for them
      • download them as a group
      • modify them in slicer
      • re-upload new files with tags
    • Thursday 10am Eastern discussion with Dan Blezek about intersection with XCEDE web services implementation.
    • XND User Interface Review with Wendy
  • People: Misha, Kevin, Wendy, Nicole, Steve, Ron (Thursday)


Other Topics

Misha to meet with Bernhard about deidentification algorithms for full body CT scans.

Use-case scenarios

External examples

Use Scenario 1

  • I am using Slicer on my laptop and would like to use XNAT desktop to keep data organized on my hard disk

Capabilities needed

    • how to set up when I download slicer?
    • I am upgrading Slicer do I need to upgrade xnat as well?
    • I worked today on a case. I would like to add my derived data and new mrml file to the existing stuff.
    • I would like to upload stuff that is currently in Slicer
    • I would like to download a mrml file and all associated data files.

notes:

See use case for discussion (XNAT tools extension): Slicer use case (similar to above).

Also see XNAT Desktop tutorial for Slicer.

  • StoreXAR doesn't currently have this functionality
  • Tim's suggested workaround for now: separately request a catalog of all files for a given session id. This is similar to what would be returned by StoreXAR as described in the use case.
  • log into central.xnat.org and click this link to see catalog
  • There's not currently a commandline executable -- we will have to write this.
  • The HTTP Session ID needs to be attached to the HTTP Request.

Advantage Windows experience

Reference

http://slicer.spl.harvard.edu/slicerWiki/index.php/Slicer3:XCEDE_use_cases#XCEDE_REST_Interface