Difference between revisions of "Mapped Hexahedral Meshing"

From NAMIC Wiki
Jump to: navigation, search
m (Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/")
 
(5 intermediate revisions by one other user not shown)
Line 6: Line 6:
  
 
'''Progress:'''
 
'''Progress:'''
 
+
* Previous work on this project was performed at the 2007 AHM -  [https://na-mic.org/w/images/3/34/2007_AHM_Programming_Half_Week_MappedMesh.ppt Mapped Mesh 4 Block]
 
* Warped meshing framework has been developed using VTK and ITK using a finite element approach
 
* Warped meshing framework has been developed using VTK and ITK using a finite element approach
 
**VTK
 
**VTK
Line 32: Line 32:
 
***Mesh quality
 
***Mesh quality
  
'''To Do:'''
+
'''Publications:'''
* Further evaluation on the phalanx bones of the hand
+
*Grosland NM, Bafna R, Magnotta VA. [http://www.informaworld.com/smpp/content~db=all?content=10.1080/10255840802136143 Automated hexahedral meshing of anatomic structures using deformable registration]. Comput Methods Biomech Biomed Engin. 12(1):35-43, 2009.
* Convert the code into a Slicer3 execution model program
 
* Develop additional Slicer3 execution model programs to support complete workflow
 
**Assignment of material properties based in image signal intensity
 
**Export to Abaqus format
 
* Determine if there are ways to improve the speed of the algorithm
 
  
 
'''Key Investigators:'''
 
'''Key Investigators:'''
Line 45: Line 40:
  
 
'''Links:'''
 
'''Links:'''
*[http://www.ccad.uiowa.edu/mimx Musculoskeletal Imaging, Modelling and Experimentation (MIMX)]
+
*[http://www.ccad.uiowa.edu/mimx Musculoskeletal Imaging, Modeling and Experimentation (MIMX)]
 
 
'''Execution Model Program Description:'''
 
* To be filled in once developed
 
 
 
This tool was developed as part of an NIH NA-MIC Collaboration Grant EB005973.
 
  
'''Program Usage:'''
 
* To be filled in once developed
 
  
 
'''Figures:'''
 
'''Figures:'''

Latest revision as of 18:27, 10 July 2017

Home < Mapped Hexahedral Meshing

Objective:

  • Develop a tool for mapped meshing that will warp a template mesh onto a surface for a new subject
  • Determine the limits that the warping algorithm will succeed and fail
  • Apply these techniques to a sample of data to determine the reliability of the algorithm with respect to mesh quality

Progress:

  • Previous work on this project was performed at the 2007 AHM - Mapped Mesh 4 Block
  • Warped meshing framework has been developed using VTK and ITK using a finite element approach
    • VTK
      • Support the reading and writing of meshes (vtkUnstructuredGrid) and surfaces (vtkPolyData)
      • Distance measures between the deforming mesh and the subject surface
      • Initial registration - Iterative Closest Point or Procrustes
    • ITK
      • Finite element framework used to warped the template mesh onto the subject surface
  • Registration made hierarchical to speed up the registration process
    • Requires multiple template meshes to exist
    • This is readily supported using the interactive meshing tools by changing the average edge length
    • Subsequent meshes are initialized using a thin plate splines
  • Parameters allowed to vary at each level of the registration
    • Iterations
    • Young's Modulus
  • Convergence based on distance between the warped template and the subject surface
    • User specified convergence threshold in mm
    • Convergence can be based on average or maximum distance
  • Boundary conditions can be applied
    • Center of the mesh - Holds the eight nodes closest to the center of the mesh fixed
    • External - Applies boundary conditions to the mesh as they fall within a user specified tolerance of the subject surface
  • Initial testing done by warping a cube mesh onto a sphere
    • Evaluation:
      • Distance between warped mesh and subject surface
      • Mesh quality

Publications:

Key Investigators:

  • Iowa: Nicole Grosland, Vincent Magnotta, Ritesh Bafna

Links:


Figures:

Initial position of the cube template mesh and the sphere surface prior to registration using the itk::FEM mapped meshing algorithm
Mesh quality evaluation of the warped cube
a)Position of the template cube mesh and surface after ICP registration. b) Resulting warped cube after itk::FEM mapped meshing. c) Distance map between the warped cube and the sphere surface
Initial attempt to apply mapped meshing algorithm to the proximal phalanx