Difference between revisions of "Measuring Alcohol Stress Interaction"

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Image:PW2009-v3.png|[[2009_Summer_Project_Week#Projects|Projects List]]
 
Image:PW2009-v3.png|[[2009_Summer_Project_Week#Projects|Projects List]]
 
Image:MonkeyProject09Slicer.png|Segmentation of Vervet Subcortical Structures
 
Image:MonkeyProject09Slicer.png|Segmentation of Vervet Subcortical Structures
Image:ChangeTracker_3dScreenShot_0.png|ChangerTracker output for hippocampus changes between state0 and state1
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</gallery>
 
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* GWE set up on SPL Cluster for registration parameter exploration
 
* GWE set up on SPL Cluster for registration parameter exploration
 
* ChangerTracker used to detect change between hippocampus of State0 and State1 of first vervet subject.
 
* ChangerTracker used to detect change between hippocampus of State0 and State1 of first vervet subject.
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{|[[Image:ChangeTracker_3dScreenShot_0.png|ChangerTracker output for hippocampus changes between state0 and state1]]|}
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* MRIBiasCorrection Module parameter exploration being set up in GWE of SPL cluster.
 
* MRIBiasCorrection Module parameter exploration being set up in GWE of SPL cluster.
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  {|
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|[[Image:CheckerB4Reg_Screenshot.jpg |thumb|220px|Before bias correction ]]
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|[[Image:CheckerAfterreg_Screenshot.png|thumb|220px|After bias correction]]
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<h3>In Progress</h3>
 
<h3>In Progress</h3>
 
* Working with Xioadong to adapt SkullStripper Module for Vervet Images
 
* Working with Xioadong to adapt SkullStripper Module for Vervet Images

Revision as of 13:18, 26 June 2009

Home < Measuring Alcohol Stress Interaction


Key Investigators

  • VT: Chris Wyatt, Vidya Rajagopalan
  • BWH: Andrey Fedorov, Ron Kikinis, Nicolas Rannou, Sylvain Jaume

Objective

  • To improve cortical segmentation of Vervet segmentation Results
  • Use Change tracker module in Slicer to study hippocampal changes between subjects at two time points

Approach, Plan

  • Improve rigid registration results by optimizing parameters
  • Add bias correction to workflow to improve segmentation results
  • Study hippocampal changes between subjects at two time points using Change Tracker

Progress

  • ChangeTracker augmented with the capability to accept externally-defined segmentation (ChangeTrackerVT in NAMIC Sandbox)
  • MRIBiasCorrectionFilter module by Nicolas Rannou available in NAMIC SandBox, initial testing on rhesus data done
  • GWE set up on SPL Cluster for registration parameter exploration
  • ChangerTracker used to detect change between hippocampus of State0 and State1 of first vervet subject.
  • MRIBiasCorrection Module parameter exploration being set up in GWE of SPL cluster.
Before bias correction
After bias correction

In Progress

  • Working with Xioadong to adapt SkullStripper Module for Vervet Images

References