Difference between revisions of "Mi2b2 (i2b2 instance with the STAR-D software) specifications and installation instructions"

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<br>
 
  
== Specifications ==
 
This server will need to be inside the institutional firewall, have PACS access via institutional intranet, and a fixed IP address. It will not need access to the outside world. <br>
 
2 GHZ processor <br>
 
2 GB RAM <br>
 
40 GB free space <br>
 
<br>
 
'''Software'''<br>
 
Windows XP SP1 or CentOS (other Linux version possible) <br>
 
JDK 6.0 <br>
 
JBoss 4.2.2 <br>
 
Apache Ant 1.6.5 <br>
 
Apache Axis2 1.1 <br>
 
Oracle 10g Express Edition (for Linux Servers) or Sql Server 2005 Express Edition (for Windows) <br>
 
 
== mi2b2 Installation Instructions ==
 
 
 
''' Prerequisites '''
 
 
* For Windows XP, make sure all of the latest updates are installed to your machine
 
* Make sure that DotNet framework 2.0 is installed on your workstation.
 
 
''' Download Software '''
 
 
* Download the zip file (mi2b2.zip) by going to i2b2.slicer.org/downloads [http://i2b2.slicer.org/downloads]
 
* Save MI2B2 file to your desktop.
 
* Extract the zipped file to C:\
 
 
''' Install JDK '''
 
 
* Navigate to C:\MI2B2\installs, and double click on ''jdk-6u20-windows-i586.exe''
 
* Accept the license agreement
 
* Click next on all prompts accepting default settings.
 
* Reboot Workstation
 
 
''' Install Sql Server Express '''
 
 
* Navigate to C:\MI2B2\installs, and double click on ''SQLEXPR32.exe''
 
* Wait for extraction to finish, accept license, and click next.
 
* Continue to click Next until you come to the Registration Information screen
 
* On the Registration Information screen, uncheck ''Hide advanced configuration options''. Click Next.
 
* Accept Default settings and click next
 
* On the Instance Name screen, change to ''Default instance''
 
* Use the default settings for service account. Click Next.
 
* On Database Security selection screen. Select ''MIXED MODE'', and enter a password (you choose)
 
* Click Next three more times (accepting default settings each time), and click Install to finish.
 
 
''' Modify Sql Server Configuration '''
 
 
* Click Start > Programs > Microsoft SQL Server 2005 > Configuration Tools > SQL Server Configuration Manager
 
* Expand SQL Server 2005 Network Connection on the left.
 
* Click on PROTOCOLS for MSSQLSERVER
 
* Right Click on TCP/IP and select ''Enable''
 
* Click on SQL Server 2005 Services
 
* On the right, right click on SQL Server (MSSQLSERVER) and select Restart.
 
 
''' Modify Enviroment Variables '''
 
 
* Right Click on My Computer and select Properties, select Advanced, select Environment Variables, select new System Variable.
 
** Name: ''JAVA_HOME''
 
** Variable: ''C:\Program Files\Java\jdk1.6.0_20''
 
* Select New System Variable again
 
** Name: ''JBOSS_HOME''
 
** Variable: ''C:\Mi2b2\jboss-4.2.2.GA''
 
* Reboot Workstation
 
 
''' Install Databases and Windows Service '''
 
 
* Click Start > Run > Type ''CMD'' and press enter.
 
* In the command window, type ''cd C:\MI2B2\Database'' and press enter
 
* In the command winder, type ''install_database'' and press enter
 
* Let the Database install finish
 
* Next in the same command window, type ''cd C:\Mi2b2\jboss-4.2.2.GA\Bin'' and press enter
 
* Type ''install_service server''' and press enter
 
* Close command window.
 
 
''' Modify MI2B2 Configurations '''
 
 
* Navigate to this directory C:\Mi2b2\jboss-4.2.2.GA\server\default\conf\stardapp
 
* Open the File stard.properties with Wordpad
 
* Add your local PACS Server information to the section below without the parenthesis.
 
** #######################################
 
** # Remote PACS System Registration
 
** #######################################
 
** #stard.pacs.remote.aetitle=DCM4CHEE
 
** #stard.pacs.remote.address=
 
** #stard.pacs.remote.port=11112
 
** stard.pacs.remote.aetitle=(''YOUR TEST AETITLE'')
 
** stard.pacs.remote.address=(''YOUR TEST PACS IP OR HOSTNAME'')
 
** stard.pacs.remote.port=(''YOUR TEST PACS PORT'')
 
* Save File
 
* Edit Same File and give the local I2B2 workstation an AETitle, Hostname and Port.
 
** #######################################
 
** # Local PACS System Registration
 
** #######################################
 
** stard.pacs.local.aetitle=(''Your MI2B2 workstation Name'')
 
** stard.pacs.local.address=(''Your MI2B2 workstation Hostname'')
 
** stard.pacs.local.port=104
 
* Save the file again and reboot workstation.
 
 
''' Start I2B2 Hive Server '''
 
 
* Right Click on My Computer and select services.
 
* Right Click on I2B2 Hive Server Service and select start (if not already started)
 
 
''' Test Software '''
 
 
* Navigate to C:\MI2B2\ C:\Mi2b2\mi2b2_workbench\
 
* Double Click on i2b2workbench.exe
 
* Logon as
 
** User: Demo
 
** Password: demouser
 
* You should be able to search your local Test Pacs System via MRN.
 

Latest revision as of 14:52, 1 February 2012

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