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| − | '''Objective:''' We want to add various statistical measures into our PDE flows for medical imaging. This will allow the incorporation of global image information into the locally defined PDE frameowrk.
| + | == Shape analysis of the female SPD caudate data == |
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| − | '''Progress:''' We developped flows which can separate the distributions inside and outside the evolving contour, and we have also been including shape information in the flows.
| + | The project week will be used to draft an initial revision of a paper on the analysis of the Harvard/PNL female SPD caudate dataset by means of the UNC shape analysis pipeline. (See also [[NA-MIC/Projects/Structural/Shape_Analysis/Caudate_and_Corpus_Callosum|NA-MIC/Projects/Structural/Shape Analysis/Caudate and Corpus Callosum]].) |
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| − | '''Completed:'''
| + | === Members === |
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| − | * A statistically based flow for image segmentation, using Fast Marching | + | * James Levitt (PNL) |
| − | | + | * Marc Niethammer (PNL) |
| − | <div class="thumb tright"><div style="width: 182px">[[Image:Gatech_SlicerModel2.jpg|[[Image:180px-Gatech_SlicerModel2.jpg|Figure 1:Screenshot from the Slicer Fast Marching module]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_SlicerModel2.jpg|[[Image:magnify-clip.png|Enlarge]]]]</div>Figure 1:Screenshot from the Slicer Fast Marching module</div></div></div>
| + | * Sylvain Bouix (PNL) |
| − | | + | * Martin Styner (UNC) |
| − | ''Code''
| + | * Martha Shenton (PNL) |
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| − | * The code has been integrated into the Slicer | |
| − | * A user-oriented tutorial for the Fast Marching algorithm is available at:[http://www.bme.gatech.edu/groups/minerva/publications/papers/pichon.slicer.fastMarching/index.html Slicer Module Tutorial] | |
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| − | ''References:''
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| − | * Eric Pichon, Allen Tannenbaum, and Ron Kikinis. A statistically based surface evolution method for medical image segmentation: presentation and validation. In International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 2, pages 711-720, 2003. Note: Best student presentation in image segmentation award[http://www.bme.gatech.edu/groups/minerva/publications/papers/pichon-media2004-segmentation.pdf [1]] | |
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| − | '''Key Investigators:''' Delphine Nain, Eric Pichon, Oleg Michailovich, Yogesh Rathi, James Malcolm, Allen Tannenbaum
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| − | '''Links:'''
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| − | * [[Algorithm:GATech#The_Fast_Marching_algorithm_has_been_integrated_into_the_Slicer.:GATech|GATech Tech Summary Page]] | |
Revision as of 14:03, 18 December 2006
Home < NAShape analysis of the female SPD caudate data
The project week will be used to draft an initial revision of a paper on the analysis of the Harvard/PNL female SPD caudate dataset by means of the UNC shape analysis pipeline. (See also NA-MIC/Projects/Structural/Shape Analysis/Caudate and Corpus Callosum.)
Members
- James Levitt (PNL)
- Marc Niethammer (PNL)
- Sylvain Bouix (PNL)
- Martin Styner (UNC)
- Martha Shenton (PNL)
