Difference between revisions of "NA-MIC External Collaborations"

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Back to [[NA-MIC_Collaborations|NA-MIC Collaborations]]
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Back to [[NA-MIC_Collaborations|NA-MIC Collaborations]]
  
 
=Projects funded by "Collaborations with NCBC PAR"=
 
=Projects funded by "Collaborations with NCBC PAR"=
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The group at Johns Hopkins is developing software that enables the stripping of skull, scalp, and meninges from structural MRI scans in a fully automated fashion.
 
The group at Johns Hopkins is developing software that enables the stripping of skull, scalp, and meninges from structural MRI scans in a fully automated fashion.
 
 
 
 
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==[[NA-MIC Brains Collaboration| PAR-05-057: BRAINS Morphology and Image Analysis]]==
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==[[NA-MIC Brains Collaboration| PAR-05-057: R01-NS050568 BRAINS Morphology and Image Analysis]]==
  
 
This project is a funded under a Continued Development and Maintenance of Software grant to PIs Vincent Magnotta, Hans Johnson, Jeremy Bockholt, and Nancy Andreasen at the University of Iowa. The goal of this project is to update the '''BRAINS''' image analysis software developed at the University of Iowa. [[NA-MIC Brains Collaboration|More...]]
 
This project is a funded under a Continued Development and Maintenance of Software grant to PIs Vincent Magnotta, Hans Johnson, Jeremy Bockholt, and Nancy Andreasen at the University of Iowa. The goal of this project is to update the '''BRAINS''' image analysis software developed at the University of Iowa. [[NA-MIC Brains Collaboration|More...]]
 
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==[[NA-MIC VMTK Collaboration | Vascular Modeling Toolkit Collaboration]]==
 
 
Slicer as a platform for segmentation and geometric analysis of vascular segments and image-based computational fluid dynamics (CFD). [[NA-MIC VMTK Collaboration|More...]]
 
 
Collaboration with [http://villacamozzi.marionegri.it/~luca/ Luca Antiga] of the [http://www.marionegri.it Mario Negri Institute].
 
  
 
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==[[NA-MIC and NITRC| NA-MIC Collaboration with NITRC]]==
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==[[NA-MIC and NITRC| 3U54EB005149-04S1 NA-MIC Collaboration with NITRC]]==
  
 
The NA-MIC Project is working to make NA-MIC neuroimaging software available through the [http://www.nitrc.org/ NITRC web site].  Supplemental support is helping to create the [http://www.slicer.org/slicerWiki/index.php/Slicer3:Loadable_Modules Slicer3 Loadable Modules] project so that slicer plugins can be hosted on NITRC, allowing greater scalability for developers and users of Slicer.
 
The NA-MIC Project is working to make NA-MIC neuroimaging software available through the [http://www.nitrc.org/ NITRC web site].  Supplemental support is helping to create the [http://www.slicer.org/slicerWiki/index.php/Slicer3:Loadable_Modules Slicer3 Loadable Modules] project so that slicer plugins can be hosted on NITRC, allowing greater scalability for developers and users of Slicer.
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==[[Collaboration:NAC| NA-MIC Collaboration with NAC]]==
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==[[Collaboration:NAC| P41RR013218 NA-MIC Collaboration with NAC]]==
  
 
NAC, the neuroimage analysis center, is a national resource center. NAC is relying on the NA-MIC kit for its general software environment. The mission of NAC is to develop novel concepts for the analysis of images of the brain and develop and disseminate tools based on those concepts.
 
NAC, the neuroimage analysis center, is a national resource center. NAC is relying on the NA-MIC kit for its general software environment. The mission of NAC is to develop novel concepts for the analysis of images of the brain and develop and disseminate tools based on those concepts.
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==[[Collaboration:NCIGT| NA-MIC Collaboration with NCIGT]]==
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==[[Collaboration:NCIGT| U41RR019703 NA-MIC Collaboration with NCIGT]]==
  
 
NCIGT is leveraging the NA-MIC kit as a platform for developing dedicated IGT capabilities.
 
NCIGT is leveraging the NA-MIC kit as a platform for developing dedicated IGT capabilities.
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==[[Collaboration:Prostate BRP| NA-MIC Collaboration with Prostate BRP]]==
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==[[Collaboration:Prostate BRP| PAR-04-023: 5R01CA111288-04 NA-MIC Collaboration with Prostate BRP]]==
  
 
BRP is leveraging the NA-MIC kit as a platform for developing dedicated IGT capabilities.
 
BRP is leveraging the NA-MIC kit as a platform for developing dedicated IGT capabilities.
  
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==[[Collaboration:AIST| NA-MIC Collaboration with Research and Development Project on Intelligent Surgical Instruments]]==
 
 
Intelligent Surgical Instruments Projects uses Open-source software engineering tools developed by NA-MIC, and leverage it to surgical robotics.
 
 
 
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| | [[Image:ISML.gif|thumb|left|100px]]
 
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==[[Collaboration:UWA-Perth| Real Time Computer Simulation of Human Soft Organ Deformation for Computer Assisted Surgery]]==
 
 
Real Time Computer Simulation of Human Soft Organ Deformation for Computer Assisted Surgery.
 
  
 
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Our sister NCBC at Stanford, dedicated to biomedical simulation, is working to adapt NA-MIC image analysis routines generate simulation models directly from MRI scans.
 
Our sister NCBC at Stanford, dedicated to biomedical simulation, is working to adapt NA-MIC image analysis routines generate simulation models directly from MRI scans.
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=International Collaborations=
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==[[NA-MIC VMTK Collaboration | Vascular Modeling Toolkit Collaboration]]==
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Slicer as a platform for segmentation and geometric analysis of vascular segments and image-based computational fluid dynamics (CFD). [[NA-MIC VMTK Collaboration|More...]]
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Collaboration with [http://villacamozzi.marionegri.it/~luca/ Luca Antiga] of the [http://www.marionegri.it Mario Negri Institute].
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| |  [[Image:AISTlogo.gif|thumb|left|100px]]
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==[[Collaboration:AIST| NA-MIC Collaboration with Research and Development Project on Intelligent Surgical Instruments]]==
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Intelligent Surgical Instruments Projects uses Open-source software engineering tools developed by NA-MIC, and leverage it to surgical robotics.
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| | [[Image:ISML.gif|thumb|left|100px]]
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==[[Collaboration:UWA-Perth| Real Time Computer Simulation of Human Soft Organ Deformation for Computer Assisted Surgery]]==
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Real Time Computer Simulation of Human Soft Organ Deformation for Computer Assisted Surgery.
 
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Revision as of 20:48, 23 November 2009

Home < NA-MIC External Collaborations

Back to NA-MIC Collaborations

Contents

Projects funded by "Collaborations with NCBC PAR"

This section describes external collaborations with NA-MIC that are funded by NIH under the "Collaboration with NCBC" PAR. (Details for this funding mechanism are provided here).

PAR-05-063: R01EB005973 Automated FE Mesh Development


PAR-05-063: R01EB005973 Automated FE Mesh Development

This project is funded under an NCBC collaboration grant to PIs Nicole Grosland and Vincent Magnotta at UIowa. The goal of this project is to integrate and expand methods to automate the development of specimen- / patient-specific finite element (FE) models into the NA-MIC kit. More...

NhpATOCPic.jpg

PAR-07-249: R01AA016748 Measuring Alcohol and Stress Interaction with Structural and Perfusion MRI

This project is funded under an NCBC collaboration grant to PIs James Daunais, Robert Kraft, and Chris Wyatt. The goal of this project is to examine the the effects of chronic alcohol self- administration on brain structure and function the monkey brain. MRI image analysis tools from the NA-MIC kit will be adapted for use with the monkey brain datasets. More...

LiverRFAPhantom.png

PAR-05-063: R01CA124377 An Integrated System for Image-Guided Radiofrequency Ablation of Liver Tumors

This project is funded under an NCBC collaboration grant to PI Kevin Cleary at Georgetown University. The goal of this project is to develop and validate an integrated system based on open source software for improved visualization and probe placement during radiofrequency ablation (RFA) of liver tumors.More...

HammerABrain.png

PAR-07-249: R01EB006733 Development and Dissemination of Robust Brain MRI Measurement Tools

This project is funded under an NCBC collaboration grant to PI Dinggang Shen at UNC-Chapel Hill. The goal of this project is to develop and widely distribute a software package for robust measurement of brain structures in MR images using computational neuroanatomy methods.More...

Virtual Colonoscopy Auto Detection - Yoshida.png

PAR-07-249: R01CA131718 NA-MIC virtual colonoscopy

This project is funded under an NCBC collaboration grant to PI Hiroyuki Yoshida. The goal of this project is to More...

JHUCollaboration.jpg

PAR-07-249: R01 EB008171 3D Shape Analysis for Computational Anatomy

This project is funded under an NCBC collaboration grant to PI Michael Miller JHU (with Joe Hennessey)

UtahCollaboration.jpg

PAR-07-249: R01MH084795: The Microstructural Basis of Abnormal Connectivity in Autism

This project is funded under an NCBC collaboration grant to PI Janet Lainhart, MD. It will use tools developed within NAMIC for a longitudinal neuroimaging, clinical, and neuropsychological study of late neurodevelopment in autism.combining analysis of connectivity and morphometry.

JHUSkullStripping.png JHU.jpg

PAR-08-183: R21-EB009900 Johns Hopkins Skull Stripping

The group at Johns Hopkins is developing software that enables the stripping of skull, scalp, and meninges from structural MRI scans in a fully automated fashion.



Additional External Collaborations

This section describes external collaborations with NA-MIC that are funded by other mechanisms:

BRAINS.gif

PAR-05-057: R01-NS050568 BRAINS Morphology and Image Analysis

This project is a funded under a Continued Development and Maintenance of Software grant to PIs Vincent Magnotta, Hans Johnson, Jeremy Bockholt, and Nancy Andreasen at the University of Iowa. The goal of this project is to update the BRAINS image analysis software developed at the University of Iowa. More...

27y-leftabdcan-T6SQ-voltage-withheart4.png

Children's Pediatric Cardiology Collaboration with SCI/SPL/Northeastern

Collaboration with John Triedman, Matt Jolley, Dana Brooks, SCI.

NITRC.png

3U54EB005149-04S1 NA-MIC Collaboration with NITRC

The NA-MIC Project is working to make NA-MIC neuroimaging software available through the NITRC web site. Supplemental support is helping to create the Slicer3 Loadable Modules project so that slicer plugins can be hosted on NITRC, allowing greater scalability for developers and users of Slicer.

P41RR013218 NA-MIC Collaboration with NAC

NAC, the neuroimage analysis center, is a national resource center. NAC is relying on the NA-MIC kit for its general software environment. The mission of NAC is to develop novel concepts for the analysis of images of the brain and develop and disseminate tools based on those concepts.

Ncigtlogo.gif

U41RR019703 NA-MIC Collaboration with NCIGT

NCIGT is leveraging the NA-MIC kit as a platform for developing dedicated IGT capabilities.

Ncigtlogo.gif

PAR-04-023: 5R01CA111288-04 NA-MIC Collaboration with Prostate BRP

BRP is leveraging the NA-MIC kit as a platform for developing dedicated IGT capabilities.


Snapshot.gif

Real-Time Computing for Image Guided Neurosurgery

Using the Tera Grid to implement mesh-based non-rigid registration for Neurosurgery.

Harvard.shield.png

NA-MIC support for Harvard CTSC Translational Imaging Consortium

The Harvard CTSC Translational Imaging Consortium is using NA-MIC communication tools to facilitate the rapid deployment of expertise in medical imaging acquisition, analysis and visualization to clinical translational investigators.

MicroscopyTutorialSlide.jpg

NCBC Supplement for Microscopy and Slicer

An NCBC Supplement to NCMIR, UCSD focused on the utilization of Slicer with microscopy data and resulted in a tutorial for use of Slicer with confocal microscopy data.

Femur Patella Tibia.jpg

Stanford Simbios

Our sister NCBC at Stanford, dedicated to biomedical simulation, is working to adapt NA-MIC image analysis routines generate simulation models directly from MRI scans.



International Collaborations

LevelSetSegmentGUIModule alpha.png

Vascular Modeling Toolkit Collaboration

Slicer as a platform for segmentation and geometric analysis of vascular segments and image-based computational fluid dynamics (CFD). More...

Collaboration with Luca Antiga of the Mario Negri Institute.

AISTlogo.gif

NA-MIC Collaboration with Research and Development Project on Intelligent Surgical Instruments

Intelligent Surgical Instruments Projects uses Open-source software engineering tools developed by NA-MIC, and leverage it to surgical robotics.


ISML.gif

Real Time Computer Simulation of Human Soft Organ Deformation for Computer Assisted Surgery

Real Time Computer Simulation of Human Soft Organ Deformation for Computer Assisted Surgery.