Difference between revisions of "NA-MIC JHU Skull Stripping Collaboration"

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Back to [[NA-MIC_External_Collaborations|NA-MIC External Collaborations]]
  
 
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==Grant#==
==Grant Number #==
 
 
R21EB009900  
 
R21EB009900  
 
 
== Key Personel==
 
== Key Personel==
* JHU: Jerry L. Prince, PI, Lotta Ellingsen, Aaron Carass, Snehashis Roy
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* JHU: Jerry L. Prince, PI, Aaron Carass, Min Chen, Snehashis Roy
 
* NA-MIC: Nicole Aucoin, Ron Kikinis
 
* NA-MIC: Nicole Aucoin, Ron Kikinis
  
 
==Funding Duration==
 
==Funding Duration==
 
08/01/2009-07/31/2011
 
08/01/2009-07/31/2011
 
 
==Goals of the Project==
 
==Goals of the Project==
 
 
The primary goals of this proposal are to enhance the NA-MIC code base with a segmentation algorithm that is capable of skull stripping and segmenting both cerebrum and cerebellum separately or collectively in a way which provides accuracy comparable to human raters.
 
The primary goals of this proposal are to enhance the NA-MIC code base with a segmentation algorithm that is capable of skull stripping and segmenting both cerebrum and cerebellum separately or collectively in a way which provides accuracy comparable to human raters.
 
 
==Aims==
 
==Aims==
 
#Rewrite SPECTRE using the NA-MIC software methodology for inclusion in Slicer 3D
 
#Rewrite SPECTRE using the NA-MIC software methodology for inclusion in Slicer 3D
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#Parameters will be optimized in order for SPECTRE to perform well with a variety of differelty aquired data
 
#Parameters will be optimized in order for SPECTRE to perform well with a variety of differelty aquired data
 
#Compare SPECTRE against all publically available (source or binary) skull-stripping software
 
#Compare SPECTRE against all publically available (source or binary) skull-stripping software
 
 
 
==Current progress==
 
==Current progress==
 
 
==References==
 
==References==
 
 
[[2009_Summer_Project_Week_Skull_Stripping | Summer 2009 Project Week]]
 
[[2009_Summer_Project_Week_Skull_Stripping | Summer 2009 Project Week]]
 
 
 
 
==Publications==
 
==Publications==
 
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* A. Carass, M.B. Wheeler, J. Cuzzocreo, P.-L. Bazin, S.S. Bassett and J.L. Prince, '''"A Joint Registration and Segmentation Approach to Skull Stripping"'''. Proceedings of the Fourth IEEE International Symposium on Biomedical Imaging (ISBI 2007), Arlington, VA, April 12-15, 2007.
* Aaron Carass, M. Bryan Wheeler, Jennifer Cuzzocreo, Pierre-Louis Bazin, Susan S. Bassett and Jerry L. Prince, A JOINT REGISTRATION AND SEGMENTATION APPROACH TO SKULL STRIPPING, ISBI 2007.
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* K. Covington, E. McCreedy, M. Chen, A. Carass, N. Aucoin, and B.A. Landman, '''"Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities"'''. Annual ORNL Biomedical Science and Engineering Conference (BSEC 2010), Oak Ridge, Tennessee, May 25-26, 2010.

Latest revision as of 20:26, 24 May 2010

Home < NA-MIC JHU Skull Stripping Collaboration

Back to NA-MIC External Collaborations

JHUSkullStripping.png

Grant#

R21EB009900

Key Personel

  • JHU: Jerry L. Prince, PI, Aaron Carass, Min Chen, Snehashis Roy
  • NA-MIC: Nicole Aucoin, Ron Kikinis

Funding Duration

08/01/2009-07/31/2011

Goals of the Project

The primary goals of this proposal are to enhance the NA-MIC code base with a segmentation algorithm that is capable of skull stripping and segmenting both cerebrum and cerebellum separately or collectively in a way which provides accuracy comparable to human raters.

Aims

  1. Rewrite SPECTRE using the NA-MIC software methodology for inclusion in Slicer 3D
  2. Complete the algorithms necessary for isolating and establishing a coordinate system on the cerebellum
  3. Parameters will be optimized in order for SPECTRE to perform well with a variety of differelty aquired data
  4. Compare SPECTRE against all publically available (source or binary) skull-stripping software

Current progress

References

Summer 2009 Project Week

Publications

  • A. Carass, M.B. Wheeler, J. Cuzzocreo, P.-L. Bazin, S.S. Bassett and J.L. Prince, "A Joint Registration and Segmentation Approach to Skull Stripping". Proceedings of the Fourth IEEE International Symposium on Biomedical Imaging (ISBI 2007), Arlington, VA, April 12-15, 2007.
  • K. Covington, E. McCreedy, M. Chen, A. Carass, N. Aucoin, and B.A. Landman, "Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities". Annual ORNL Biomedical Science and Engineering Conference (BSEC 2010), Oak Ridge, Tennessee, May 25-26, 2010.