Difference between revisions of "Projects:FreeSurferNumericalRecipiesReplacement"

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== FreeSurfer Numerical Recipies Replacement ==
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Back to [[Algorithm:MGH|MGH Algorithms]]
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__NOTOC__
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= FreeSurfer Numerical Recipies Replacement =
  
Back to [[NA-MIC_Collaborations|NA-MIC_Collaborations]], [[Algorithm:MGH|MGH Algorithms]]
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Our objective is to replace algorithms using proprietary numerical recipes in FreeSurfer in efforts to open source FreeSurfer.
  
''Objective:'' Replace algorithms using proprietary numerical recipes in FreeSurfer in efforts to open source FreeSurfer.
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= Description =
  
 
''Status:'' Completed.
 
''Status:'' Completed.

Latest revision as of 15:32, 26 August 2009

Home < Projects:FreeSurferNumericalRecipiesReplacement
Back to MGH Algorithms

FreeSurfer Numerical Recipies Replacement

Our objective is to replace algorithms using proprietary numerical recipes in FreeSurfer in efforts to open source FreeSurfer.

Description

Status: Completed.

  1. 12 numerical recipes replaced with open source alternatives, mainly using VXL.
  2. 14 unit tests run nightly.


  • Use case: 'Unit tests pass with all replacements.'
  • Difficulty: Medium-High
  • Impact: High
  1. Write test cases for each algorithm (Snyder, Jen): done
  2. Identify replacements (Snyder, Jen): done
  3. Integrate required libraries into FreeSurfer build process (Snyder, Jen): done
  4. Iteratively replace recipes with substitutes and run tests (Snyder, Jen): done