Difference between revisions of "ProstateNavigation workflow"
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* Started evaluation of BSpline registration in BRAINSFit module with masks | * Started evaluation of BSpline registration in BRAINSFit module with masks | ||
* [[BRAINSFit_to_simpleITK|MR prostate registration from BRAINSFit to simpleITK]] | * [[BRAINSFit_to_simpleITK|MR prostate registration from BRAINSFit to simpleITK]] | ||
| + | * [[BRAINSFit_prostate_registration|prostate registration using BRAINSFit in Slicer 4.4]] | ||
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Revision as of 17:30, 9 May 2015
Home < ProstateNavigation workflow
Key Investigators
Peter Behringer, Andrey Fedorov, Hans Johnson
Project Description
Objective
- Design an easy to use GUI for ProstateNavigation (Planning, Registration, Navigation)
- Get ideas how prostate segmentation can be done quicker, fully automatic in best case
- Validate different pre-op to intra-op registration approaches
Approach, Plan
- Create mockup GUI
- Try to use existing segmentation modules like Robust Statistics Segmenter or VolumeClip for quicker prostate segmentation
- Evaluate the segmentation results (DICE-Coefficient) by comparing to manual segmentation of trained radiologists using this dataset
- Evaluate pre-op to intra-op registration with General Registration (BRAINS) module in Slicer 4.4
Progress
- Created requirements list containing the core functions of the workflow
- Created draft of the GUI with its necessary components
- Best solution for prostate segmentation seems to be VolumeClip Model (under 15 seconds user interaction time)
- Started evaluation of BSpline registration in BRAINSFit module with masks
- MR prostate registration from BRAINSFit to simpleITK
- prostate registration using BRAINSFit in Slicer 4.4
