Difference between revisions of "RSNA2012 Planning"

From NAMIC
Jump to: navigation, search
m (Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/")
m (Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/")
 
Line 24: Line 24:
 
  || Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking  || Data, Volumes, Models, Scene Views + DICOM ( note: the DICOM part will be a new addition to the slides) || Steve || Sonia
 
  || Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking  || Data, Volumes, Models, Scene Views + DICOM ( note: the DICOM part will be a new addition to the slides) || Steve || Sonia
 
|-
 
|-
|| Classroom Course 2 - ICIA11, Nov.25, 11:00-12:30 pm  ||  [http://www.slicer.org/slicerWiki/images/c/c6/Slicer4QuantitativeImaging.pdf  Quantitative Imaging Tutorial] ||  ICIA 11 datasets: [http://www.na-mic.org/Wiki/images/7/73/PETCTFusion-Tutorial-Data.zip PETCT data],  [http://www.slicer.org/slicerWiki/images/b/b2/ChangeTracker2011.zip Change Tracker Data] || Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit || Change Tracker, Volume Rendering, BRAINSFit, CropVolume} || Steve || Sonia
+
|| Classroom Course 2 - ICIA11, Nov.25, 11:00-12:30 pm  ||  [http://www.slicer.org/slicerWiki/images/c/c6/Slicer4QuantitativeImaging.pdf  Quantitative Imaging Tutorial] ||  ICIA 11 datasets: [https://na-mic.org/w/images/7/73/PETCTFusion-Tutorial-Data.zip PETCT data],  [http://www.slicer.org/slicerWiki/images/b/b2/ChangeTracker2011.zip Change Tracker Data] || Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit || Change Tracker, Volume Rendering, BRAINSFit, CropVolume} || Steve || Sonia
 
|-
 
|-
 
|}
 
|}
Line 61: Line 61:
 
||8|| White matter exploration for neurosurgical planning || [[media:WhiteMatterExplorationData.zip‎| White Matter Exploration dataset]]  || [https://www.slicer.org/wiki/Documentation/4.1/Training#Slicer4_Neurosurgical_Planning_Tutorial Neurosurgical planning Tutorial]] || Diffusion (Estimation, Tractography, Fiducial Seeding), Editor, Model Maker || Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display || Demian || Ron
 
||8|| White matter exploration for neurosurgical planning || [[media:WhiteMatterExplorationData.zip‎| White Matter Exploration dataset]]  || [https://www.slicer.org/wiki/Documentation/4.1/Training#Slicer4_Neurosurgical_Planning_Tutorial Neurosurgical planning Tutorial]] || Diffusion (Estimation, Tractography, Fiducial Seeding), Editor, Model Maker || Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display || Demian || Ron
 
|-
 
|-
||9|| Longitudinal analysis of meningioma growth||  [http://www.na-mic.org/Wiki/images/7/73/PETCTFusion-Tutorial-Data.zip PETCT data],  [http://www.slicer.org/slicerWiki/images/b/b2/ChangeTracker2011.zip Change Tracker Data] || [http://www.slicer.org/slicerWiki/images/c/c6/Slicer4QuantitativeImaging.pdf  Quantitative Imaging Tutorial] || Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit || Change Tracker, Volume Rendering, BRAINSFit, CropVolume || Jc || Andrey
+
||9|| Longitudinal analysis of meningioma growth||  [https://na-mic.org/w/images/7/73/PETCTFusion-Tutorial-Data.zip PETCT data],  [http://www.slicer.org/slicerWiki/images/b/b2/ChangeTracker2011.zip Change Tracker Data] || [http://www.slicer.org/slicerWiki/images/c/c6/Slicer4QuantitativeImaging.pdf  Quantitative Imaging Tutorial] || Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit || Change Tracker, Volume Rendering, BRAINSFit, CropVolume || Jc || Andrey
 
|-
 
|-
 
||10||Image-guided prostate interventions || [[media:RSNA2011_Prostate.zip | Demo dataset from RSNA'2011 -- crash while switching to  a scene view]] see [http://www.na-mic.org/Bug/view.php?id=1523 here.], [[Media:RSNA2012_Prostate.zip | Demo dataset created from scratch in Slicer4 RSNA'2012]] || Pre-op/Intra-op registration; [http://www.na-mic.org/Wiki/index.php/Slicer4:Prostate_mpMRI_review_use_case Use Case Demo] [[media:RSNA2010_Prostate.zip | Prostate Data]]  || Linked Viewing || Annotations, Models, Crosshairs, CompareViews || Jim || Andrey
 
||10||Image-guided prostate interventions || [[media:RSNA2011_Prostate.zip | Demo dataset from RSNA'2011 -- crash while switching to  a scene view]] see [http://www.na-mic.org/Bug/view.php?id=1523 here.], [[Media:RSNA2012_Prostate.zip | Demo dataset created from scratch in Slicer4 RSNA'2012]] || Pre-op/Intra-op registration; [http://www.na-mic.org/Wiki/index.php/Slicer4:Prostate_mpMRI_review_use_case Use Case Demo] [[media:RSNA2010_Prostate.zip | Prostate Data]]  || Linked Viewing || Annotations, Models, Crosshairs, CompareViews || Jim || Andrey

Latest revision as of 14:27, 10 July 2017

Home < RSNA2012 Planning

Process

We are following the release schedule documented during the 4.2 release planning session. The following tables describe the target behavior for the RSNA 2012 courses and booth.

  • Adopt-a-demo program
    • For the demos and tutorials listed below, the roles of developer and clinical contact are:
      • clinical expert who is responsible for the data and content of the tutorial and can answer questions about how the program is meant to work. This person should be providing the data and in some cases provides a step by step tutorial.
      • developer / tester
        • is the point of contact if anyone finds that the demo in question does not work correctly
        • is responsible for testing that the functionality is working for the demo on all platforms (mac, windows, linux). If you do not have the platform available yourself, you will need to offer to trade some work with another person who has access to the platform. You cannot just ignore testing just because you don't have ready access to all the platforms!
        • needs to get a working familiarity with the demo and investigate any incorrect or unworkable behavior
        • needs to file bug reports and track down appropriate developer resources to get issues resolved (pester your fellow developers as needed so that issues are addressed).
    • If there's a tutorial already existing, the developer should be able to go through the testing on all platforms and only contact the tutorial writer with feedback or questions. In the case of demos or atlas datasets, the developer should discuss with the clinical contact about what functionality should be supported and test that this is working as expected on all platforms.
    • In all cases the developer should try to provide a test that loads and manipulates the data, using either a python script or Qt testing, to help automate the testing process for future releases.
    • Developers should consider following these instructions for writing a python self test so that they can easily and reproducibly confirm that demos are running correctly on all platforms.

RSNA hands-on courses

Schedule Tutorial slides Datasets Tools Slicer Modules Developer/Tester Clinical Expert
Classroom Course 1 - ICIA32, Nov.27, 12:30-2:00 pm 3D Visualization of DICOM Data for Radiology Applications RSNA2012_Part1 RSNA2012_Part2 RSNA2012_Part3 Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking Data, Volumes, Models, Scene Views + DICOM ( note: the DICOM part will be a new addition to the slides) Steve Sonia
Classroom Course 2 - ICIA11, Nov.25, 11:00-12:30 pm Quantitative Imaging Tutorial ICIA 11 datasets: PETCT data, Change Tracker Data Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit Change Tracker, Volume Rendering, BRAINSFit, CropVolume} Steve Sonia

Quantitative Imaging Reading Room

Logistics: The exhibit must be fully installed by 5:00 pm on Saturday, November 24. The Lakeside Learning Center exhibit area will open on Saturday, November 24 from 8:00 am until 10:00 pm for installation.


Tentative list of demonstrations for the RSNA 2012 Slicer booth. Needs further development and testing Note: RSNA demo machines will need nvidia graphics cards to get GPU Volume Rendering

# DEMO Datasets Notes Tools Slicer Modules Developer/Tester Clinical Expert
0 3D Visualization of DICOM images for Radiology Applications 3D Visualization of DICOM Data for Radiology Applications RSNA2012_Part1 RSNA2012_Part2 RSNA2012_Part3 Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking Data, Volumes, Models, Scene Views Jim Sonia
1 Data Loading and Visualization Slicer3Visualization Data 3D Visualization Data ‎ Slicer4Visualization Tutorial Compare View, Clipping, Save, Restore, Scene Views, DICOM studies sorting, DICOM networking (?) Data, Volumes, Models, Scene Views Jim Sonia
2 MRI-based topographic parcellation of human brain EM Segmenter Data registration, segmentation EMSegmenter Tasks EM Segmenter EMSegmenter Kilian Ron
3 Volume Rendering #1 Head Head CT Scan (Osirix Manix Dataset) show cropping, transfer functions, GPU, slice composite view, Annotations Volume Rendering and Annotations Volume Rendering, Annotations, Scene Views Julien Ron
4 Volume Rendering #2 Abdomen Abdominal CT scan with AAA (Osirix Panoramix Dataset) show cropping, transfer functions, GPU, slice composite view, Annotations Volume Rendering and Annotations Volume Rendering, Annotations, Scene Views Julien Ron
5 Volume Rendering #3 Thorax Thoracic CT scan show cropping, transfer functions, GPU, slice composite view, Annotations Volume Rendering and Annotations Volume Rendering, Annotations, Scene Views Julien Ron
6 Traumatic Brain Injury Case Analysis TBI Demo Data (UCLA) Atlas data link TBI tutorial ABC Segmentation, Model Maker, Editor, Annotations Data, ABC Segmentation, Model Maker, Editor, Annotations, Scene Views Alex Jack Van Horn
7 Radiotherapy SlicerRT ART dose verification data SlicerRT RSNA2012 Tutorial SlicerRT, Plastimatch DICOM, General Registration (BRAINS), Resample Image (BRAINS),
SlicerRT: DicomRtImport, Dose Accumulation, Dose Volume Histogram
Csaba Andras
8 White matter exploration for neurosurgical planning White Matter Exploration dataset Neurosurgical planning Tutorial] Diffusion (Estimation, Tractography, Fiducial Seeding), Editor, Model Maker Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display Demian Ron
9 Longitudinal analysis of meningioma growth PETCT data, Change Tracker Data Quantitative Imaging Tutorial Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit Change Tracker, Volume Rendering, BRAINSFit, CropVolume Jc Andrey
10 Image-guided prostate interventions Demo dataset from RSNA'2011 -- crash while switching to a scene view see here., Demo dataset created from scratch in Slicer4 RSNA'2012 Pre-op/Intra-op registration; Use Case Demo Prostate Data Linked Viewing Annotations, Models, Crosshairs, CompareViews Jim Andrey
11 Brain Atlas NAC Multi-modality MRI-based Atlas of the Brain
Slicer4 version
Show model hierarchies, visibility, scene views restore Linked Viewing Data, Volumes, Models, Scene Views Nicole Marianna
12 Head and Neck Atlas Head and Neck Atlas
Slicer4 version
Show model hierarchies, visibility, scene views restore Linked Viewing Data, Volumes, Models, Scene Views Nicole Marianna
13 Abdominal Atlas Abdominal Atlas
Slicer4 version
Show model hierarchies, visibility, scene views restore Linked Viewing Data, Volumes, Models, Scene Views Nicole Marianna
14 Knee Atlas Knee Atlas
Slicer4 version
Show model hierarchies, visibility, scene views restore Linked Viewing Data, Volumes, Models, Scene Views Nicole Marianna

List of Slicer Modules involved in RSNA tutorials & demos

  • Data
  • Welcome to Slicer
  • Volumes
  • Models
  • Scene Views
  • Annotations
  • Volume Rendering
  • Editor
  • Model Maker
  • Diffusion Tensor Estimation
  • Diffusion Tensor Scalar Measurements
  • Tractography Labelmap Seeding
  • Tractography Fiducial Seeding
  • Tractography Display
  • BRAINSTools
  • Change Tracker
  • CropVolume
  • Extensions:
    • ABC
    • Plastimatch
    • EMSegmenter
    • Skull Stripper
    • Reporting
    • Longitudinal PET CT
  • Documentation: We need all core modules reasonably well documented.