RSNA2012 Planning

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RSNA hands-on courses

Nb Tutorial slides Datasets Tools Slicer Modules Developer/Tester Clinical Expert
Classroom Course 1 - ICIA32, Nov.27, 12:30-2:00 pm 3D Visualization of DICOM Data for Radiology Applications I ICIA 32 dataset Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking Data, Volumes, Models, Scene Views + DICOM ( note: the DICOM part will be a new addition to the slides) Steve Sonia
Classroom Course 2 - ICIA11, Nov.25, 11:00-12:30 pm Quantitative Imaging Tutorial ICIA 11 datasets: PETCTFusion and Change Tracker Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit Change Tracker, Volume Rendering, BRAINSFit, CropVolume} Steve Sonia

Quantitative Imaging Reading Room

Tentative list of demonstrations for the RSNA 2012 Slicer booth. Needs further development and testing Note: RSNA demo machines will need nvidia graphics cards to get GPU Volume Rendering

Nb DEMO Datasets Notes Tools Slicer Modules Developer/Tester Clinical Expert
0 3D Visualization of DICOM images for Radiology Applications RSNA datasets 3D Visualization for Radiology Applications Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking Data, Volumes, Models, Scene Views Jim Sonia
1 Data Loading and Visualization Slicer3Visualization Data ‎ Slicer4Visualization Tutorial Compare View, Clipping, Save, Restore, Scene Views, DICOM studies sorting, DICOM networking (?) Data, Volumes, Models, Scene Views Jim Sonia
2 MRI-based topographic parcellation of human brain EM Segmenter Data registration, segmentation EMSegmenter Tasks EM Segmenter EMSegmenter Kilian Ron
3 Volume Rendering #1 Head Head CT Scan (Osirix Manix Dataset) show cropping, transfer functions, GPU, slice composite view, Annotations Volume Rendering and Annotations Volume Rendering, Annotations, Scene Views Julien Ron
4 Volume Rendering #2 Abdomen Abdominal CT scan with AAA (Osirix Panoramix Dataset) show cropping, transfer functions, GPU, slice composite view, Annotations Volume Rendering and Annotations Volume Rendering, Annotations, Scene Views Julien Ron
5 Volume Rendering #3 Thorax Thoracic CT scan show cropping, transfer functions, GPU, slice composite view, Annotations Volume Rendering and Annotations Volume Rendering, Annotations, Scene Views Julien Ron
6 Traumatic Brain Injury Case Analysis TBI Demo Data (UCLA) TBI tutorial ABC Segmentation, Model Maker, Editor, Annotations Data, ABC Segmentation, Model Maker, Editor, Annotations, Scene Views Alex Jack Van Horn
7 Radiotherapy Plastimatch Dose Warping Data (MGH) Plastimatch Tutorial Plastimatch, DVH extension (Csaba) Data, Plastimatch Extension: DICOM/DICOM-RT Import, DICOM/DICOM-RT Export, B-Spine Deformable Registration,XFORMWARP Warping with transform Transforms, Csaba Andras
8 White matter exploration for neurosurgical planning White Matter Exploration dataset Neurosurgical planning Tutorial] Diffusion ( Estimation, Tractography, Fiducial Seeding), Editor, Model Maker Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display Demian Ron
9 Longitudinal analysis of meningioma growth Change Tracker Data are part of the tutorial Quantitative Imaging Tutorial Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit Change Tracker, Volume Rendering, BRAINSFit, CropVolume Jc Andrey
10 Image-guided prostate interventions Prostate Data updated for Slicer4, in progress Can load RSNA2010 demo scene, mostly working, see [1] Pre-op/Intra-op registration; Use Case Demo Prostate Data Linked Viewing Annotations, Models, Crosshairs, CompareViews Jim Andrey
11 Brain Atlas NAC Multi-modality MRI-based Atlas of the Brain Work in progress - atlases are being updated Linked Viewing Data, Volumes, Models, Scene Views Nicole Marianna
12 Abdomen Atlas Knee Atlas Work in progress - atlases are being updated Linked Viewing Data, Volumes, Models, Scene Views Nicole Marianna
13 Knee Atlas Atlas Abdominal Atlas Work in progress - atlases are being updated Linked Viewing Data, Volumes, Models, Scene Views Nicole Marianna

Process

We are following the release schedule documented during the 4.2 release planning session.

TODO: how to write a python test for a demo or tutorial

  • Adopt-a-demo program
    • For the demos and tutorials listed above, the roles of developer and clinical contact are:
      • clinical expert who is responsible for the data and content of the tutorial and can answer questions about how the program is meant to work. This person should be providing the data and in some cases provides a step by step tutorial.
      • developer / tester who will be responsible for testing that the functionality is working for the demo on all platforms (mac, windows, linux).
    • If there's a tutorial already existing, the developer should be able to go through the testing on all platforms and only contact the tutorial writer with feedback or questions. In the case of demos or atlas datasets, the developer should discuss with the clinical contact about what functionality should be supported and test that this is working as expected on all platforms.
    • In all cases the developer should try to provide a test that loads and manipulates the data, using either a python script or Qt testing, to help automate the testing process for future releases.

List of Slicer Modules involved in RSNA tutorials & demos

  • Data
  • Welcome to Slicer
  • Volumes
  • Models
  • Scene Views
  • Annotations
  • Volume Rendering
  • Editor
  • Model Maker
  • Diffusion Tensor Estimation
  • Diffusion Tensor Scalar Measurements
  • Tractography Labelmap Seeding
  • Tractography Fiducial Seeding
  • Tractography Display
  • BRAINSTools
  • Change Tracker
  • CropVolume
  • Extensions:
    • ABC
    • Plastimatch
    • EMSegmenter
    • Skull Stripper
    • Reporting
  • Documentation: We need all core modules reasonably well documented.