Difference between revisions of "Slicer3:ColorsFiducialsFreesurferModelmaker"

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(Apr 2007 update)
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== 2007 AHM Project Half Week ==
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<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer3:ColorsFiducialsFreesurferModelmaker  here]</font></big>
 
 
* [[Media:2007_Project_Half_Week_Slicer3Colors.ppt | 4 block:Colors]]
 
* [[Media:2007_Project_Half_Week_Slicer3Fiducials.ppt | 4 block:Fiducials]]
 
* [[Media:2007_Project_Half_Week_Slicer3FreeSurfer.ppt | 4 block:FreeSurfer]]
 
* [[Media:2007_Project_Half_Week_Slicer3ModelMaker.ppt | 4 block:ModelMaker]]
 
 
 
== Colors ==
 
 
 
* MRML Color nodes implemented
 
* basic module UI done, display colours with scalar id, names, color box
 
* incorporated color node selector in volumes and models GUIs
 
* FreeSurfer default Heat, Green/Red look up tables are supported, as well as reading in default labels and annotation labels, and loading color tables from annotation files.
 
* Procedural color nodes expanded, support for vtkColorTransferFunction as well as vtkLookupTable in the viewer widget.
 
* Scalar overlays supported in the Models GUI, Display tab.
 
* '''TO DO''': continue work on UI
 
 
 
== Fiducials ==
 
 
 
* MRML Node for list implemented, GUI for module refined
 
* vtkGlyphSource2D subclassed for Slicer, StarBurst option integrated
 
* vtkSlicerGlyphSource2D usable in both the main viewer and in 2D slices
 
* 3D glyphs of various types implemented for the 3D viewer
 
* S. Pieper linked 2D and 3D fiducials, can drag fiducials in 2D
 
* Placing fiducials in the 3D window mostly complete
 
* '''TO DO''': Support dragging fiducials in the 3D window
 
 
 
== FreeSurfer ==
 
 
 
* MGH ITK Reader ported from NAMIC Sandbox, works as any other volume reader now
 
* Slicer 2.x source code ported as a Slicer 3 Library, used in Query Atlas scripts
 
* FreeSurfer .W surfaces and CURV surfaces are loadable through the Models GUI
 
* FreeSurfer scalar overlays are loadable via the Models Display GUI: thickness, curv, sulc, area, annot, and the new volume encoded scalars in MGH format
 
* vtkFSLookupTables integrated into MRML Color Nodes
 
* Added support to composite two scalar arrays into one
 
* color transfer functions support added to MRML Color Nodes for calculating transfer functions when composite two scalar arrays
 
* '''TODO''': other volume format support through the GUI instead of just scriptable, support scalar overlay compositing through the GUI
 
 
 
== ModelMaker ==
 
 
 
* Implemented as a Command Line Module
 
* Added option to write out a MRML file with display nodes giving color information (tries to pick a good default color node to get names from)
 
* '''TODO''': waiting for support for XML files as input to the CLI modules so can use a defined vtkMRMLColorNode to name models
 

Revision as of 17:37, 19 May 2008

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