Slicer3:Module:QueryAtlas

QueryAtlas

Caption 1

Slides and movie from April07 fBIRN meeting

Slides for Oct07 BIRN meeting

General Information

Module Type & Category

Type: Interactive

Category: N/A

Authors & Collaborators

Steve Pieper, Greg Brown, David Kennedy, Maryanne Martone, Jyl Boline, Burak Ozyurt,Wendy Plesniak, Michael Halle, Anna Tang, and Florin Talos

Module Description

The QueryAtlas module can be used to:

• Load volumetric analyses from XCEDE compliant or XNAT databases;
• Visualize volumes, models and parametric map overlays.
• Annotate models and labelmaps with atlas-based anatomy labels
• Map those local anatomy names to symantically compatible terms used in the larger biomedical informatics (neuroinformatics) community
• Formulate queries in the context of particular study results (fMRI activations or group statistics, for example)
• View, manage and save collections of query results

Usage

Example data

Download FIPS/FreeSurfer Xcede catalog example data: QueryAtlasExampleData.zip .

Download Qdec (XNAT) example data: TEST5.qdec .

Quick Tour of Features and Use

List all the panels in your interface, their features, what they mean, and how to use them. For instance:

• Input panel:
• Parameters panel:
• Output panel:
• Viewing panel:

Development

Dependencies

Other modules or packages that are required for this module's use.

Known bugs

Follow this link to the Slicer3 bug tracker:

http://na-mic.org/Mantis/main_page.php

Usability issues

Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing:

http://na-mic.org/Mantis/main_page.php

Source code & documentation

Customize following links for your module:

http://www.na-mic.org/ViewVC/index.cgi/

Links to documentation generated by doxygen:

http://www.na-mic.org/Slicer/Documentation/Slicer3/html/

More Information

Acknowledgement

Include funding and other support here.

References

Publications related to this module go here. Links to pdfs would be useful.