Difference between revisions of "Slicer3:Module:QueryAtlas"
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List all the panels in your interface, their features, what they mean, and how to use them. For instance: | List all the panels in your interface, their features, what they mean, and how to use them. For instance: | ||
| − | * ''' | + | * '''Scene Setup panel:''' |
| − | * ''' | + | * '''Annotation & Display Options panel:''' |
| − | * ''' | + | * '''Ontology Mapping panel:''' |
| − | * ''' | + | * '''Search Terms panel:''' |
| + | * '''Build Queries panel:''' | ||
== Development == | == Development == | ||
Revision as of 21:02, 13 October 2007
Home < Slicer3:Module:QueryAtlasQueryAtlas
Slides for Oct07 BIRN meeting
General Information
Module Type & Category
Type: Interactive
Category: N/A
Authors & Collaborators
Steve Pieper, Greg Brown, David Kennedy, Maryanne Martone, Jyl Boline, Burak Ozyurt,Wendy Plesniak, Michael Halle, Anna Tang, and Florin Talos
Module Description
The QueryAtlas module can be used to:
- Load volumetric analyses from XCEDE compliant or XNAT databases;
- Visualize volumes, models and parametric map overlays.
- Annotate models and labelmaps with atlas-based anatomy labels
- Map those local anatomy names to symantically compatible terms used in the larger biomedical informatics (neuroinformatics) community
- Formulate queries in the context of particular study results (fMRI activations or group statistics, for example)
- View, manage and save collections of query results
Usage
Example data
Download FIPS/FreeSurfer Xcede catalog example data: QueryAtlasExampleData.zip .
Download Qdec (XNAT) example data: TEST5.qdec .
Quick Tour of Features and Use
List all the panels in your interface, their features, what they mean, and how to use them. For instance:
- Scene Setup panel:
- Annotation & Display Options panel:
- Ontology Mapping panel:
- Search Terms panel:
- Build Queries panel:
Development
Dependencies
Other modules or packages that are required for this module's use.
Known bugs
Follow this link to the Slicer3 bug tracker:
http://na-mic.org/Mantis/main_page.php
Usability issues
Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing:
http://na-mic.org/Mantis/main_page.php
Source code & documentation
Customize following links for your module:
http://www.na-mic.org/ViewVC/index.cgi/
Links to documentation generated by doxygen:
http://www.na-mic.org/Slicer/Documentation/Slicer3/html/
More Information
Acknowledgement
This research was supported by Grant 5 MOI RR 000827 to the FIRST BIRN and Grant 1 U24 RR021992 to the FBIRN Biomedical Informatics Research Network (BIRN, http://www.nbirn.net), that is funded by the National Center for Research Resources (NCRR) at the National Institutes of Health (NIH). This work was also supported by NA-MIC, NAC, NCIGT. NeuroNames ontology and URI resources are provided courtesy of BrainInfo, University of Washington.
