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===QueryAtlas===
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<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [https://www.slicer.org/wiki/Slicer3:Module:QueryAtlas  here]</font></big>
 
 
{|
 
|[[Image:QAsearch.png|thumb|280px|Caption 1]]
 
|}
 
 
 
[[ Media:QA_Presentation.zip | Slides and movie]] from April07 fBIRN meeting
 
 
 
[[ Media:QueryAtlas-AHM2007.ppt | Slides ]] for Oct07 BIRN meeting
 
 
 
== General Information ==
 
===Module Type & Category===
 
 
 
Type: Interactive
 
 
 
Category: N/A
 
 
 
===Authors & Collaborators ===
 
Steve Pieper, Greg Brown, David Kennedy, Maryanne Martone, Jyl Boline, Burak Ozyurt,Wendy Plesniak, Michael Halle, Anna Tang, and Florin Talos
 
 
 
===Module Description===
 
 
 
The QueryAtlas module can be used to:
 
 
 
* Load volumetric analyses from XCEDE compliant or XNAT databases;
 
* Visualize volumes, models and parametric map overlays.
 
* Annotate models and labelmaps with atlas-based anatomy labels
 
* Map those local anatomy names to symantically compatible terms used in the larger biomedical informatics (neuroinformatics) community
 
* Formulate queries in the context of particular study results (fMRI activations or group statistics, for example)
 
* View, manage and save collections of query results
 
 
 
== Usage ==
 
 
 
===Example data===
 
 
 
Download FIPS/FreeSurfer Xcede catalog example data: [[ media:QueryAtlasExampleData.zip | QueryAtlasExampleData.zip ]].
 
 
 
Download Qdec (XNAT) example data: [[http://www.na-mic.org/Slicer/Download/Data/TEST4.qdec  | TEST5.qdec ]].
 
 
 
===Quick Tour of Features and Use===
 
List all the panels in your interface, their features, what they mean, and how to use them. For instance:
 
 
 
* '''Input panel:'''
 
* '''Parameters panel:'''
 
* '''Output panel:'''
 
* '''Viewing panel:'''
 
 
 
== Development ==
 
 
 
===Dependencies===
 
 
 
Other modules or packages that are required for this module's use.
 
 
 
===Known bugs===
 
 
 
Follow this link to the Slicer3 bug tracker:
 
 
 
http://na-mic.org/Mantis/main_page.php
 
 
 
===Usability issues===
 
 
 
Follow this link to the Slicer3 bug tracker. Please select the '''usability issue category''' when browsing or contributing:
 
 
 
http://na-mic.org/Mantis/main_page.php
 
 
 
===Source code & documentation===
 
 
 
Customize following links for your module:
 
 
 
http://www.na-mic.org/ViewVC/index.cgi/
 
 
 
Links to documentation generated by doxygen:
 
 
 
http://www.na-mic.org/Slicer/Documentation/Slicer3/html/
 
 
 
== More Information ==
 
 
 
===Acknowledgement===
 
Include funding and other support here.
 
 
 
===References===
 
Publications related to this module go here. Links to pdfs would be useful.
 

Latest revision as of 18:07, 10 July 2017

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Note: We are migrating this content to the slicer.org domain - The newer page is here