Slicer3:Module:QueryAtlas
QueryAtlas
Slides and movie from April07 fBIRN meeting
Slides for Oct07 BIRN meeting
General Information
Module Type & Category
Type: Interactive
Category: N/A
Authors & Collaborators
Steve Pieper, Greg Brown, David Kennedy, Maryanne Martone, Jyl Boline, Burak Ozyurt,Wendy Plesniak, Michael Halle, Anna Tang, and Florin Talos
Module Description
The QueryAtlas module can be used to:
- Load volumetric analyses from XCEDE compliant or XNAT databases;
- Visualize volumes, models and parametric map overlays.
- Annotate models and labelmaps with atlas-based anatomy labels
- Map those local anatomy names to symantically compatible terms used in the larger biomedical informatics (neuroinformatics) community
- Formulate queries in the context of particular study results (fMRI activations or group statistics, for example)
- View, manage and save collections of query results
Usage
Example data
Download FIPS/FreeSurfer Xcede catalog data: QueryAtlasExampleData.zip .
Quick Tour of Features and Use
List all the panels in your interface, their features, what they mean, and how to use them. For instance:
- Input panel:
- Parameters panel:
- Output panel:
- Viewing panel:
Development
Dependencies
Other modules or packages that are required for this module's use.
Known bugs
Follow this link to the Slicer3 bug tracker:
http://na-mic.org/Mantis/main_page.php
Usability issues
Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing:
http://na-mic.org/Mantis/main_page.php
Source code & documentation
Customize following links for your module:
http://www.na-mic.org/ViewVC/index.cgi/
Links to documentation generated by doxygen:
http://www.na-mic.org/Slicer/Documentation/Slicer3/html/
More Information
Acknowledgement
Include funding and other support here.
References
Publications related to this module go here. Links to pdfs would be useful.