Difference between revisions of "Slicer3:Pipeline Integration"

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LONI Pipeline website: http://pipeline.loni.ucla.edu
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<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [https://www.slicer.org/wiki/Slicer3:Pipeline_Integration  here]</font></big>
 
 
With the release of Pipeline v4.0 in December '07, we've developed a stable and robust framework for continuing development into the future. With regards to the Slicer 3 (currently in Beta) integration, the LONI Pipeline has a complete [http://cms.loni.ucla.edu/pipeline/default.aspx?id=2134#Running%20from%20the%20command%20line command line interface] that can be used to run workflows with dynamically bound values in addition to it's GUI interface.
 
<code>
 
  Usage: pipeline [OPTIONS] PIPEFILE [paramID1=value ... paramIDN=valueN]
 
    -execute            Validates then executes the specified workflow
 
    -validate          Just validates the specified workflow then exits
 
    -display            Displays all the required/enabled parameters in the
 
                          workflow
 
    -sync              Program will not exit until workflow finishes executing
 
    -credentials=FILE  Specify an XML file containing credentials to a Pipeline
 
                          server that will be needed for execution or validation.
 
                          This is not necessary if you're username and password
 
                          are saved in your list of connections in the graphical
 
                          client. Format is the following:
 
                          <?xml version="1.0" encoding="UTF-8"?>
 
                          <connections>
 
                            <conn address="cranium.loni.ucla.edu"
 
                                  user="jane"
 
                                  password="secret" />
 
                          </connections>
 
    -help              Prints out LONI Pipeline help. (this text)
 
    -version            Prints out the LONI Pipeline version
 
</code>
 
 
 
Using information from the  [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Execution_Model_Documentation#Executable_plugins_with_command_line_options Slicer3 execution model] we will add support for the --xml flag to the Pipeline command line so Slicer can use the Pipeline from it's GUI. This will occur after the release of the final version of Slicer3.
 
 
 
'''Developers'''<nowiki>: </nowiki>
 
 
 
* Celia Cheung
 
* Arash Payan
 
* Jia Wei Tam
 

Latest revision as of 18:02, 10 July 2017

Home < Slicer3:Pipeline Integration

Note: We are migrating this content to the slicer.org domain - The newer page is here