Difference between revisions of "Slicer3:Slicer3 Workshop UNC Chapel Hill 2008"

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==Logistics==
 
==Logistics==
 
* Date: April 14, 2008
 
* Date: April 14, 2008
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* Location: Medical Biomolecular Research Building at 111 Mason Farm Road, Chapel Hill NC 27599
+
* Location: Room 2204 Medical Biomolecular Research Building at 111 Mason Farm Road, Chapel Hill NC 27599
 
* Participants are required to come with their own computer (PC, Linux or MacOS) with a built-in version of Slicer3.  
 
* Participants are required to come with their own computer (PC, Linux or MacOS) with a built-in version of Slicer3.  
 
* '''Attendance is limited to 40 participants.''' To sign-up for this event, please send an e-mail with the subject line 'NA-MIC Workshop Registration - April 14' to Sonia Pujol, Ph.D. (spujol at bwh.harvard.edu) with your contact information (Name, Title, Affiliation and Address) and the characteristics of your laptop computer (OS, RAM, Processor).
 
* '''Attendance is limited to 40 participants.''' To sign-up for this event, please send an e-mail with the subject line 'NA-MIC Workshop Registration - April 14' to Sonia Pujol, Ph.D. (spujol at bwh.harvard.edu) with your contact information (Name, Title, Affiliation and Address) and the characteristics of your laptop computer (OS, RAM, Processor).

Revision as of 17:32, 9 April 2008

Home < Slicer3:Slicer3 Workshop UNC Chapel Hill 2008

Syllabus

This workshop provides an introduction to the Slicer3 software platform, part of the National Alliance for Medical Imaging Computing open-source toolkit. Participants will learn how to use Slicer3 for image analysis and 3D visualization, and how to integrate external programs with the open-source software.

Course Faculty

  • Sonia Pujol, Ph.D., Surgical Planning Laboratory, Harvard Medical School
  • Randy Gollub, M.D., Ph.D., Athinoula A. Martinos Center for Biomedical Imaging, Harvard Medical School
  • Steve Piper, Ph.D., Isomics

Logistics

  • Date: April 14, 2008
  • Location: Room 2204 Medical Biomolecular Research Building at 111 Mason Farm Road, Chapel Hill NC 27599
  • Participants are required to come with their own computer (PC, Linux or MacOS) with a built-in version of Slicer3.
  • Attendance is limited to 40 participants. To sign-up for this event, please send an e-mail with the subject line 'NA-MIC Workshop Registration - April 14' to Sonia Pujol, Ph.D. (spujol at bwh.harvard.edu) with your contact information (Name, Title, Affiliation and Address) and the characteristics of your laptop computer (OS, RAM, Processor).

Agenda 9:00 AM - 5:00 PM

  • 9:00 am - 9:10 am Preliminary session: Software and data installation trouble shooting
  • 9:10 am - 9:20 am Welcome and introduction to the Workshop (Randy Gollub)
  • 9:20 am - 10:00 am Slicer3 Overview and Applications (Steve Pieper)
  • 10:00 am - 10:45 am Hands-on Session 1: Data Loading and Visualization in Slicer3 (Sonia Pujol)
  • 10:45 am - 11:00 am Coffee-break
  • 11:00 am - 11:45 pm Hands-on Session 2: Data Saving in Slicer3 (Sonia Pujol)
  • 11:45 am - 12:00 pm Conclusion and Guided-tour of the Slicer3 Bug Tracker (Steve Pieper)
  • 12:00 pm - 1:45 pm Lunch on Your Own
  • 1:45 pm - 2:00 pm Slicer3 Execution Model Introduction (Steve Pieper)
  • 2:00 pm - 3:15 pm Hands-on Session 3: Slicer3 Plug-ins (Sonia Pujol)
  • 3:15 pm - 3:30 pm Coffee-break
  • 3:30 pm - 4:45 pm Hands-on Session 3: Slicer3 Plug-ins (continued, Sonia Pujol)
  • 4:45 pm - 5:00 pm Feedback from participants and Conclusion (Randy Gollub)

Preparation for the Workshop

Please complete the following items prior to the course. Support will be provided as requested.

  • Software Installation: Please build Slicer3 on the computer you will be bringing to the workshop

The instructions for installing the pre-requisite development packages and for building Slicer3 are posted on the NAMIC website: http://www.na-mic.org/Wiki/index.php/Slicer3:Build_Instructions.

Note: The process of building Slicer3 takes 2 hours and requires 2 GB of RAM.


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