Difference between revisions of "Slicer3 Informatics Workflow Design & XNAT updates"

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<gallery>
 
<gallery>
 
Image:PW2009-v3.png|[[2009_Summer_Project_Week|Project Week Main Page]]
 
Image:PW2009-v3.png|[[2009_Summer_Project_Week|Project Week Main Page]]
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Image:FetchMISlicerInformatics1.png | Screen capture of FetchMI module
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Image:FetchMISlicerRegistration.png | Screen capture of FetchMI module
 
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* WUSTL: Dan Marcus, Kevin Archie, Mikhail Milchenko
 
* WUSTL: Dan Marcus, Kevin Archie, Mikhail Milchenko
 
* BWH: Ron Kikinis, Steve Pieper, Wendy Plesniak
 
* BWH: Ron Kikinis, Steve Pieper, Wendy Plesniak
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* others who will join, please add your names!
  
 
<div style="margin: 20px;">
 
<div style="margin: 20px;">
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* Learn about new API for XNAT Desktop and XNAT Enterprise & how to integrate with Slicer
 
* Learn about new API for XNAT Desktop and XNAT Enterprise & how to integrate with Slicer
 
* Design user-centered informatics workflow, including
 
* Design user-centered informatics workflow, including
** query,  
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** '''query''',  
** query result browsing,  
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** results '''browsing''',  
** authoring/applying metadata,  
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** authoring & applying metadata,  
** load & save
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** consolidated load & save
 
in Slicer, for XNAT and other data suppliers
 
in Slicer, for XNAT and other data suppliers
* Work on design plan to harmonize local and remote load/save capabilities in Slicer, now spread across:
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** File->Save,
 
** File->Load Scene, and
 
** FetchMI
 
  
 
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<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
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 +
* Fix fetchmi bugs (prior to Proj week)
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* Work on adapting implementation to new API
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* Discuss workflows to support '''search''' and '''browsing''' for 3 common kinds of studies:
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** Analysis of individual studies
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** Longitudinal studies
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** Population studies
  
 
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==References==
 
==References==
* [http://www.slicer.org/slicerWiki/index.php/Modules:DataModule-3.4  Loading Data in Slicer3.4]
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* [https://www.slicer.org/wiki/Modules:DataModule-3.4  Loading Data in Slicer3.4]
* [http://www.slicer.org/slicerWiki/index.php/Modules:Saving-Documentation-3.4  Saving Data in Slicer3.4]
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* [https://www.slicer.org/wiki/Modules:Saving-Documentation-3.4  Saving Data in Slicer3.4]
* [http://www.slicer.org/slicerWiki/index.php/Modules:FetchMI-Documentation-3.4 FetchMI module in Slicer3.4]
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* [https://www.slicer.org/wiki/Modules:FetchMI-Documentation-3.4 FetchMI module in Slicer3.4]

Latest revision as of 18:07, 10 July 2017

Home < Slicer3 Informatics Workflow Design & XNAT updates


Key Investigators

  • WUSTL: Dan Marcus, Kevin Archie, Mikhail Milchenko
  • BWH: Ron Kikinis, Steve Pieper, Wendy Plesniak
  • others who will join, please add your names!

Objective

  • Learn about new API for XNAT Desktop and XNAT Enterprise & how to integrate with Slicer
  • Design user-centered informatics workflow, including
    • query,
    • results browsing,
    • authoring & applying metadata,
    • consolidated load & save

in Slicer, for XNAT and other data suppliers


Approach, Plan

  • Fix fetchmi bugs (prior to Proj week)
  • Work on adapting implementation to new API
  • Discuss workflows to support search and browsing for 3 common kinds of studies:
    • Analysis of individual studies
    • Longitudinal studies
    • Population studies

Progress


References