Difference between revisions of "Slicer4 Diffusion tutorial"

From NAMIC Wiki
Jump to: navigation, search
 
(5 intermediate revisions by 2 users not shown)
Line 2: Line 2:
  
 
* Mantis Bug Reports:
 
* Mantis Bug Reports:
** [http://www.na-mic.org/Bug/view.php?id=1722 Brain Mask] (assigned to Demian)
+
** [http://www.na-mic.org/Bug/view.php?id=1722 Brain Mask] (assigned to Demian, checked it out. It seems that it is a limitation of the Otsu strategy in this case due to the lack of padding, probably we need a real brain extraction tool)
** [http://www.na-mic.org/Bug/view.php?id=1679 Color by Orientation] (assigned to Demian)
+
** [http://www.na-mic.org/Bug/view.php?id=1679 Color by Orientation] (assigned to Demian, fixed)
** [http://www.na-mic.org/Bug/view.php?id=1678 Glyphs Visualization] (assigned to Alex)
+
** [http://www.na-mic.org/Bug/view.php?id=1678 Glyphs Visualization] (assigned to Alex, fixed)
**[http://www.na-mic.org/Bug/view.php?id=1685 Fiducials Seeding ] (assigned to Alex)
+
**[http://www.na-mic.org/Bug/view.php?id=1685 Fiducials Seeding ] (assigned to Alex, fixed)
** [http://www.na-mic.org/Bug/view.php?id=1684 Consistency of the GUI in the labelmap and fiducial seeding modules] (assigned to Alex)
+
** [http://www.na-mic.org/Bug/view.php?id=1684 Consistency of the GUI in the labelmap and fiducial seeding modules] (assigned to Alex, fixed)
** [http://www.na-mic.org/Bug/view.php?id=1724 Scalar Measurement computation issue (Planar measure)] : wrong window and level values in the Volumes module ( assigned to Julien Finet) iss due to extreme values in the data - can this be clamped in the scalar estimation module?
+
** [http://www.na-mic.org/Bug/view.php?id=1724 Scalar Measurement computation issue (Planar measure)] : wrong window and level values in the Volumes module (assigned to Demian, fixed)
** [http://www.na-mic.org/Bug/view.php?id=1725 Scalar measurement update issue]]
+
** [http://www.na-mic.org/Bug/view.php?id=1725 Scalar measurement update issue]] (fixed by Julien Finet)
  
* Suggested Reorganization of the Diffusion menu (assigned to Demian)
+
* Suggested Reorganization of the Diffusion menu (assigned to Demian, Done)
 
**Diffusion Data Conversion:  
 
**Diffusion Data Conversion:  
 
***DICOM to Nrrd
 
***DICOM to Nrrd
Line 23: Line 23:
 
*** Resample
 
*** Resample
  
* DicomToNrrdConverter should be DICOM To NRRD Converter, and make the parameters of the Output sections visible on the GUI (assigned to Demian)
+
* DicomToNrrdConverter should be DICOM To NRRD Converter, and make the parameters of the Output sections visible on the GUI (assigned to Demian, done)
 
* Slicer crashes when saving the DTI tutorial Scene on Mac (assigned to Steve)
 
* Slicer crashes when saving the DTI tutorial Scene on Mac (assigned to Steve)
  
 
* Tutorial dataset: [[media:DiffusionMRI_tutorialData.zip‎| Slicer4 DTI dataset]]
 
* Tutorial dataset: [[media:DiffusionMRI_tutorialData.zip‎| Slicer4 DTI dataset]]
 
* '''Suggested dead-line March 12, 2012''' ( preparation for the Iowa Workshop March 20-21)
 
* '''Suggested dead-line March 12, 2012''' ( preparation for the Iowa Workshop March 20-21)

Latest revision as of 16:26, 12 March 2012

Home < Slicer4 Diffusion tutorial

Feb.14 Diffusion meeting - Sonia's reports on the DTI modules of the current Slicer4 release:

  • Suggested Reorganization of the Diffusion menu (assigned to Demian, Done)
    • Diffusion Data Conversion:
      • DICOM to Nrrd
      • DTIimport/export
    • DWI:
      • Brain Mask
      • Tensor Estimation
      • Denoising
    • DTI
      • Scalar Measurements
      • Tractography
      • Resample
  • DicomToNrrdConverter should be DICOM To NRRD Converter, and make the parameters of the Output sections visible on the GUI (assigned to Demian, done)
  • Slicer crashes when saving the DTI tutorial Scene on Mac (assigned to Steve)
  • Tutorial dataset: Slicer4 DTI dataset
  • Suggested dead-line March 12, 2012 ( preparation for the Iowa Workshop March 20-21)