Difference between revisions of "Smoothing multi-label brain segmentations"
From NAMIC Wiki
| Line 7: | Line 7: | ||
* GM(without the following specified sub-cortical structures) label 2, | * GM(without the following specified sub-cortical structures) label 2, | ||
* GM sub-cortical structures | * GM sub-cortical structures | ||
| − | ** RCaudate | + | ** RCaudate label 13 |
| − | ** LCaudate | + | ** LCaudate label 14 |
| − | + | ** RPutamen label 15 | |
| − | + | ** LPutamen label 16 | |
| − | + | ** RGlobusPallidus label 17 | |
| − | + | ** LGlobusPallidus label 18 | |
| − | + | ** RThalamus label 11 | |
| − | + | ** LThalamus label 12 | |
| − | + | ** RHippocampus label 19 | |
| − | + | ** LHippocampus label 20 | |
Revision as of 22:35, 27 January 2010
Home < Smoothing multi-label brain segmentationssmoothing workflow
- input: a multi-label map to be smoothed. With structures:
- WM label 3
- CSF label 1
- GM(without the following specified sub-cortical structures) label 2,
- GM sub-cortical structures
- RCaudate label 13
- LCaudate label 14
- RPutamen label 15
- LPutamen label 16
- RGlobusPallidus label 17
- LGlobusPallidus label 18
- RThalamus label 11
- LThalamus label 12
- RHippocampus label 19
- LHippocampus label 20
- Segmentation using one of the approaches below
- Up to Affine registration of the subject to bias-corrected, skull-stripped Baseline scan
- Map the Baseline ICC mask to the State 1 space
- Skull stripping State 1 scan
- Bias-correction of State 1 scan
- Repeat up to affine registration of skull-stripped, bias-corrected State 1 scan to Baseline
