Difference between revisions of "Special topic breakout: Atlases"
From NAMIC Wiki
| Line 22: | Line 22: | ||
discuss among the group what topics below of are interest to discuss, and prioritize. | discuss among the group what topics below of are interest to discuss, and prioritize. | ||
| − | * define | + | * define Slicer software infrastructure and conventions for atlases |
| + | ** Accommodating volumetric and surface based atlases | ||
** Providing unique identifiers per structure within any atlas | ** Providing unique identifiers per structure within any atlas | ||
** Providing a mapping from structure to unique color | ** Providing a mapping from structure to unique color | ||
| + | ** Providing ability to visually represent related groups of structures (''e.g.'' structures that comprise a single structural or functional system, superstructure, or designated region) | ||
** Providing mappings from local identifiers to names/IDs in official ontologies, and common synonyms | ** Providing mappings from local identifiers to names/IDs in official ontologies, and common synonyms | ||
** Developing and representing structural and functional relationships | ** Developing and representing structural and functional relationships | ||
** Developing tools to perform cross-atlas indexing | ** Developing tools to perform cross-atlas indexing | ||
| − | * | + | ** How would we describe a 'how-to create a slicer atlas' document? |
| + | * mapping atlases to individuals for overlaying experimental data or individual imagedata | ||
* interactive tools for displaying labels in various nomenclatures on mouseover | * interactive tools for displaying labels in various nomenclatures on mouseover | ||
| − | * tools to do point-based and region-based indexing | + | * tools to do both point-based and region-based indexing (useful for brain?) |
* tools to display and navigate hierarchical relationships between structures, superstructures and substructures | * tools to display and navigate hierarchical relationships between structures, superstructures and substructures | ||
| + | * compatibility with web-based tools for making queries in anatomical context | ||
* other useful interactive tools? | * other useful interactive tools? | ||
... | ... | ||
Revision as of 20:17, 31 May 2007
Home < Special topic breakout: Atlases
Return to Project Week Main Page
Atlases Breakout Session
June 26th, 3-4pm
Location: Grier Rooms A & B: 34-401A & 34-401B
Attendees:
- Gary Christensen
- Wendy Plesniak
- Brad Davis
- Florin Talos
- Michael Halle
Agenda: discuss among the group what topics below of are interest to discuss, and prioritize.
- define Slicer software infrastructure and conventions for atlases
- Accommodating volumetric and surface based atlases
- Providing unique identifiers per structure within any atlas
- Providing a mapping from structure to unique color
- Providing ability to visually represent related groups of structures (e.g. structures that comprise a single structural or functional system, superstructure, or designated region)
- Providing mappings from local identifiers to names/IDs in official ontologies, and common synonyms
- Developing and representing structural and functional relationships
- Developing tools to perform cross-atlas indexing
- How would we describe a 'how-to create a slicer atlas' document?
- mapping atlases to individuals for overlaying experimental data or individual imagedata
- interactive tools for displaying labels in various nomenclatures on mouseover
- tools to do both point-based and region-based indexing (useful for brain?)
- tools to display and navigate hierarchical relationships between structures, superstructures and substructures
- compatibility with web-based tools for making queries in anatomical context
- other useful interactive tools?
...
