Difference between revisions of "Special topic breakout: Atlases"

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Agenda:
 
Agenda:
discuss among the group what topics below of are interest to discuss, and prioritize.
+
Discuss among the group what topics below of are interest to discuss, and prioritize.
  
* define Slicer software infrastructure and conventions for atlases
+
* Define Slicer software infrastructure and conventions for atlases
 
** Accommodating volumetric and surface based atlases
 
** Accommodating volumetric and surface based atlases
 
** Providing unique identifiers per structure within any atlas
 
** Providing unique identifiers per structure within any atlas

Revision as of 20:17, 31 May 2007

Home < Special topic breakout: Atlases





Atlases Breakout Session

June 26th, 3-4pm

Location: Grier Rooms A & B: 34-401A & 34-401B





Attendees:

  • Gary Christensen
  • Wendy Plesniak
  • Brad Davis
  • Florin Talos
  • Michael Halle

Agenda: Discuss among the group what topics below of are interest to discuss, and prioritize.

  • Define Slicer software infrastructure and conventions for atlases
    • Accommodating volumetric and surface based atlases
    • Providing unique identifiers per structure within any atlas
    • Providing a mapping from structure to unique color
    • Providing ability to visually represent related groups of structures (e.g. structures that comprise a single structural or functional system, superstructure, or designated region)
    • Providing mappings from local identifiers to names/IDs in official ontologies, and common synonyms
    • Developing and representing structural and functional relationships
    • Developing tools to perform cross-atlas indexing
    • How would we describe a 'how-to create a slicer atlas' document?
  • mapping atlases to individuals for overlaying experimental data or individual imagedata
  • interactive tools for displaying labels in various nomenclatures on mouseover
  • tools to do both point-based and region-based indexing (useful for brain?)
  • tools to display and navigate hierarchical relationships between structures, superstructures and substructures
  • compatibility with web-based tools for making queries in anatomical context
  • other useful interactive tools?

...