Support for Batch Processing

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Objective:

To develop a command liner interface for the BRAINS3 project that will support batch processing with no graphical user interface.

Possible scripting languages

• TCL
• Python

Progress:

• The BRAINS3 build system is being updated that will allow for integration of ITK, VTK, Slicer3, and BRAINS3 TCL command lines within a single executable. Adapters will then need to be written to pass data between these systems.
• ITK-VTK already exists with WrapITK wrapping.
• BRAINS3-ITK exists and needs to be wrapped with WrapITK.
• Need to determine how to get Data into slicer from VTK or ITK.

Key Investigators:

• University of Iowa: Vincent Magnotta, Hans Johnson, Nancy Andreasen
• The MIND Institute: Jeremy Bockholt

Links:

• University of Iowa Department of Psychiatry
• University of Iowa MRI Center
• The MIND Institute

Papers: