Difference between revisions of "Training:Workshop Prerequisite"

From NAMIC Wiki
Jump to: navigation, search
Line 1: Line 1:
 
='''Preparation for the Workshop''' (under construction)=
 
='''Preparation for the Workshop''' (under construction)=
  
Please install the following components of the NA-MIC kit prior to the workshop. Support will be provided as requested.
+
The following components of the NA-MIC kit will be used during the workshop. Support will be provided as requested.
  
 
* 1. '''Slicer3''': software application and open-source programming environment
 
* 1. '''Slicer3''': software application and open-source programming environment
Line 8: Line 8:
 
* 4. '''Visualization Toolkit''' (VTK) environment
 
* 4. '''Visualization Toolkit''' (VTK) environment
 
* 5. '''Development packages'''
 
* 5. '''Development packages'''
* 6. ''Common test database - TBD''
+
* 6. ''Datasets ''
  
 
='''Slicer3 Software''' =
 
='''Slicer3 Software''' =
Line 18: Line 18:
 
   ./Slicer3/Scripts/getbuildtest.tcl
 
   ./Slicer3/Scripts/getbuildtest.tcl
  
='''CMake'''=
+
This will install the following packages:
 +
 
 +
 
 +
=='''CMake'''==
 
CMake 2.6
 
CMake 2.6
='''ITK environment'''=
+
 
 +
=='''ITK environment'''==
  
 
ITK 3.6
 
ITK 3.6
  
='''VTK environment'''=
+
=='''VTK environment'''==
  
 
VTK 5.2
 
VTK 5.2
  
 
='''Development packages''' =
 
='''Development packages''' =
 +
 
=='''Linux'''==
 
=='''Linux'''==
 
* gcc
 
* gcc
Line 62: Line 67:
 
* Subversion.  Installation [http://downloads.open.collab.net/binaries.html options here].  Get the latest svn version for compatibility with the server and be sure your client includes SSL (so it can access https repositories).
 
* Subversion.  Installation [http://downloads.open.collab.net/binaries.html options here].  Get the latest svn version for compatibility with the server and be sure your client includes SSL (so it can access https repositories).
  
='''Common test database'''=
+
='''Datasets'''=
TBD
 

Revision as of 16:21, 4 June 2008

Home < Training:Workshop Prerequisite

Preparation for the Workshop (under construction)

The following components of the NA-MIC kit will be used during the workshop. Support will be provided as requested.

  • 1. Slicer3: software application and open-source programming environment
  • 2. CMake: cross-platform open-source build system
  • 3. Insight Segmentation and Registration Toolkit (ITK) environment
  • 4. Visualization Toolkit (VTK) environment
  • 5. Development packages
  • 6. Datasets

Slicer3 Software

Please do the following two commands to download the source code and build Slicer3 on the computer that you will be bringing to the workshop:

  svn co http://www.na-mic.org/svn/Slicer3/branches/Munich2008 Slicer3

  ./Slicer3/Scripts/getbuildtest.tcl

This will install the following packages:


CMake

CMake 2.6

ITK environment

ITK 3.6

VTK environment

VTK 5.2

Development packages

Linux

  • gcc
  • gcc-c++
  • libX11
  • libX11-devel (libX11-dev on Ubuntu)
  • libXt-devel (libXt-dev on Ubuntu)
  • opengl/mesa (libgl1-mesa-dev on Ubuntu)
  • libncurses5-dev

Below is a Ubuntu one line install:

sudo apt-get install subversion cvs tcl8.4 gcc g++ libX11-dev libXt-dev libxext-dev libgl1-mesa-dev libncurses5-dev tcsh

Note: The packages names below correspond to Ubuntu 7.04. Please ensure that you use the appropriate package names for your distribution. Also, be sure you have OpenGL and the GLX extension to X working. To check the installation, it is usually enough to confirm that the command 'glxgears' runs with no errors.

Windows

  • Developer Studio 8 2005 ( if installed in the default locations in "c:/Program Files" it will be detected by the build script automatically (you need to edit slicer_variables.tcl to point to the installation)).
  • Cygwin with the following 5 packages
    • tcltk
    • svn
    • cvs
    • unzip
    • curl

Note: CMake and VTK will not work on a FAT formatted disk (use NTFS).

Apple Mac OS X

For Mac OS 10.4.10 install the following from the OS disks (not installed by default on new machines):

  • Xcode Tools (OS Disk 1, default window)
  • X11: also on OS Disk 1, but you need to scroll down and find the Optional Installs installer and select X11 under Applications. See step-by-step instructions.
  • X11SDK - from OS Disk 1, Xcode Tools/Packages/X11SDK.pkg
  • Subversion. Installation options here. Get the latest svn version for compatibility with the server and be sure your client includes SSL (so it can access https repositories).

Datasets