Difference between revisions of "UKF Tractography in Slicer 4"

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# Setup CTest and ensure its working.
 
# Setup CTest and ensure its working.
 
# Verify that the Tractography module works on a test invivo data set
 
# Verify that the Tractography module works on a test invivo data set
      ## Verify that the following 4 models work properly.
+
## Verify that the following 4 models work properly. 1-Tensor, 1-Tensor with Free-water, 2-tensor, 2-tensor with free-water.          
            1-Tensor, 1-Tensor with Free-water, 2-tensor, 2-tensor with free-water.
 
 
# Design a logo for the extension module.
 
# Design a logo for the extension module.
 
# Document the module (including utility functions) -- make a wiki page.
 
# Document the module (including utility functions) -- make a wiki page.

Revision as of 21:08, 4 January 2013

Home < UKF Tractography in Slicer 4

Key Investigators

  • Ryan Eckbo, BWH, HMS
  • Yogesh Rathi, BWH, HMS
  • Demian Wassermann, BWH, HMS
  • Carl-Fredrik Westin, BWH, HMS

Project Description

Objective

  • High Priority:

Have a working UKFtractography module in Slicer4 extension:

  1. Change and update the UKFTractography.xml file for receiving a .vtk file as output.
  2. Setup CTest and ensure its working.
  3. Verify that the Tractography module works on a test invivo data set
    1. Verify that the following 4 models work properly. 1-Tensor, 1-Tensor with Free-water, 2-tensor, 2-tensor with free-water.
  4. Design a logo for the extension module.
  5. Document the module (including utility functions) -- make a wiki page.
     (Include the References to the appropriate papers and make nice snapshots).
  1. Add the 2 utility functions to the extension module and verify if they work.
  • Optional:
 1. Use the VTK library to output the data (.vtp).
  • Future Work:
1. Move from boost to ITK multithreading.


Approach, Plan

Progress