Difference between revisions of "UKF Tractography in Slicer 4"

From NAMIC Wiki
Jump to: navigation, search
Line 24: Line 24:
 
#* Verify that the following 4 models work properly. 1-Tensor, 1-Tensor with Free-water, 2-tensor, 2-tensor with free-water.             
 
#* Verify that the following 4 models work properly. 1-Tensor, 1-Tensor with Free-water, 2-tensor, 2-tensor with free-water.             
 
# Design a logo for the extension module.
 
# Design a logo for the extension module.
# Document the module (including utility functions) -- make a wiki page.
+
# Document the module (including utility functions) -- make a wiki page. (Include the References to the appropriate papers and make nice snapshots).
      (Include the References to the appropriate papers and make nice snapshots).
+
      # Add the 2 utility functions to the extension module and verify if they work.
# Add the 2 utility functions to the extension module and verify if they work.
 
  
 
* '''Optional''':
 
* '''Optional''':

Revision as of 21:09, 4 January 2013

Home < UKF Tractography in Slicer 4

Key Investigators

  • Ryan Eckbo, BWH, HMS
  • Yogesh Rathi, BWH, HMS
  • Demian Wassermann, BWH, HMS
  • Carl-Fredrik Westin, BWH, HMS

Project Description

Objective

  • High Priority:

Have a working UKFtractography module in Slicer4 extension:

  1. Change and update the UKFTractography.xml file for receiving a .vtk file as output.
  2. Setup CTest and ensure its working.
  3. Verify that the Tractography module works on a test invivo data set
    • Verify that the following 4 models work properly. 1-Tensor, 1-Tensor with Free-water, 2-tensor, 2-tensor with free-water.
  4. Design a logo for the extension module.
  5. Document the module (including utility functions) -- make a wiki page. (Include the References to the appropriate papers and make nice snapshots).
     # Add the 2 utility functions to the extension module and verify if they work.
  • Optional:
 1. Use the VTK library to output the data (.vtp).
  • Future Work:
1. Move from boost to ITK multithreading.


Approach, Plan

Progress