Difference between revisions of "IGT:ToolKit/Navigation-tutorial"
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Back to [[IGT:ToolKit|IGT:ToolKit]] | Back to [[IGT:ToolKit|IGT:ToolKit]] | ||
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| + | ==Overview== | ||
The general navigation system consists of the following components:<br> | The general navigation system consists of the following components:<br> | ||
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This tutorial explains how to set up a general navigation system with a tracker simulator. | This tutorial explains how to set up a general navigation system with a tracker simulator. | ||
| − | + | ==Software Installation Instructions== | |
=== '''Step 1: Install Slicer3''' === | === '''Step 1: Install Slicer3''' === | ||
Go to the [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Install-Slicer3 Slicer3 Install] site. | Go to the [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Install-Slicer3 Slicer3 Install] site. | ||
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*** [[Media:TrackerSimulator_Linux_x86_64.tgz|For Linux (x86, 64-bit)]]. | *** [[Media:TrackerSimulator_Linux_x86_64.tgz|For Linux (x86, 64-bit)]]. | ||
** Building the tracker simulator from source code: [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Build-Tracker-Simulator Find the instructions here] | ** Building the tracker simulator from source code: [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Build-Tracker-Simulator Find the instructions here] | ||
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| + | ==Tutorial Materials== | ||
| + | * Tutorial slides for the Basic Navigation Tutorial | ||
| + | * Atlas - download the .zip file from either the [http://www.na-mic.org/pages/Special:PubDB_View?dspaceid=1265 SPL-PNL Brain Atlas] or the [http://www.spl.harvard.edu/pages/Special:PubDB_View?dspaceid=1266 SPL Abdominal Atlas] | ||
| + | * Tool model | ||
| + | |||
| + | ==People== | ||
| + | * [http://www.spl.harvard.edu/pages/People/tokuda Junichi Tokuda] | ||
| + | * [http://www.spl.harvard.edu/pages/People/hliu Haiying Liu] | ||
| + | * [http://www.spl.harvard.edu/pages/People/noby Nobuhiko Hata] | ||
| + | * [http://www.spl.harvard.edu/pages/People/dpace Danielle Pace] | ||
Revision as of 03:00, 4 June 2008
Home < IGT:ToolKit < Navigation-tutorialBack to IGT:ToolKit
Contents
Overview
The general navigation system consists of the following components:
- Slicer3: the base platform for navigation
- IGT loadable modules: Software modules, pluginned into Slicer3, for supporting IGT specific functionality
- IGSTK: An interfacing tool for common commercial tracking devices
- Tracking device: e.g. NDI Aurora tracking system
This tutorial explains how to set up a general navigation system with a tracker simulator.
Software Installation Instructions
Step 1: Install Slicer3
Go to the Slicer3 Install site.
Step 2: Install the OpenIGTLink module
OpenIGTLink is a communication protocol used to interface Slicer3 with external devices, such as trackers, imaging devices and robots. OpenIGTLink is currently distributed as a loadable module for Slicer3.
- Step 2a: You have the choice of either downloading a precompiled version OR building it yourself from the source code:
- Precompiled OpenIGTLink module (for use with Slicer 3.2): Download and unzip.
- Building the OpenIGTLink module from source code: Find the instructions here
- Step 2b: Copy the binary into your-slicer3-build(install)-directory/lib/Slicer3/Modules. You should see the OpenIGTLink module in the Slicer3 module list once Slicer3 is started.
Step 3: Install the tracker simulator
The tracking simulator will be used to generate and send fake tracking data to Slicer3.
- You have the choice of either downloading a precompiled version OR building it yourself from the source code:
- Precompiled tracking simulator: Download and unzip.
- Building the tracker simulator from source code: Find the instructions here
Tutorial Materials
- Tutorial slides for the Basic Navigation Tutorial
- Atlas - download the .zip file from either the SPL-PNL Brain Atlas or the SPL Abdominal Atlas
- Tool model
