Difference between revisions of "Events:VT-NAMIC-NCBC-Collaboration-meeting-2009"

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(Created page with '== Logistics == *Confirmed date: Friday, '''October 9 8-4pm (?), 2009''' *Location: [http://www.spl.harvard.edu/pages/Directions#Getting_to_1249_Boylston_Street. 1249 Boylston S…')
 
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== Logistics ==
 
== Logistics ==
  
−
*Confirmed date: Friday, '''October 9 8-4pm (?), 2009'''
+
*Confirmed date: Friday, '''October 9, 2009, 9am-4pm (time is tentative, but room has been reserved, confirmed with Katie MAstrogiacomo)'''
 
*Location: [http://www.spl.harvard.edu/pages/Directions#Getting_to_1249_Boylston_Street. 1249 Boylston Street], 2nd floor conference room
 
*Location: [http://www.spl.harvard.edu/pages/Directions#Getting_to_1249_Boylston_Street. 1249 Boylston Street], 2nd floor conference room
  
 
== Goals ==
 
== Goals ==
 +
 +
* To be completed or partially completed prior to the meeting by Andriy Fedorov and Ginger Li:
 +
** Provide necessary user- and developer-level Slicer training for Ginger
 +
** Understand the currently used processing workflow
 +
** Confirm reproducibility of the processing steps between VT and SPL
 +
** Document the processing steps as precisely as necessary for reproducibility and cross-validation of the results
 +
* To be completed during the meeting
 +
** Review and confirm the correctness of the workflow based on the wiki documentation (Chris, Ron and Sandy)
 +
** Review the available data and current segmentation results
 +
** Develop action timeline for the remaining part of the funded project period
 +
** Discuss publication plans
 +
 +
== Agenda ==
 +
 +
*Review, discuss and finalize the processing workflow (to be discussed and documented by Andriy Fedorov and Ginger Li prior to the meeting Oct 7-8)
 +
**atlas construction
 +
**image pre-processing
 +
**registration
 +
**segmentation
 +
*Review currents results
 +
* Identify Slicer components of the workflow that are ... working, broken, missing
 +
 +
== Attendance ==
 +
 +
Open to all interested parties:
 +
 +
#Chris Wyatt
 +
#Ginger Li
 +
#Ron Kikinis
 +
#Sandy Wells
 +
#Andriy Fedorov
 +
 +
== References ==
 +
TODO: link these
 +
* notes on the current workflow
 +
* registration results
 +
* newly available Slicer modules (registration, mask detection, bias correction)
 +
* atlas construction paper by Styner's group

Revision as of 22:41, 30 September 2009

Home < Events:VT-NAMIC-NCBC-Collaboration-meeting-2009

Logistics

  • Confirmed date: Friday, October 9, 2009, 9am-4pm (time is tentative, but room has been reserved, confirmed with Katie MAstrogiacomo)
  • Location: 1249 Boylston Street, 2nd floor conference room

Goals

  • To be completed or partially completed prior to the meeting by Andriy Fedorov and Ginger Li:
    • Provide necessary user- and developer-level Slicer training for Ginger
    • Understand the currently used processing workflow
    • Confirm reproducibility of the processing steps between VT and SPL
    • Document the processing steps as precisely as necessary for reproducibility and cross-validation of the results
  • To be completed during the meeting
    • Review and confirm the correctness of the workflow based on the wiki documentation (Chris, Ron and Sandy)
    • Review the available data and current segmentation results
    • Develop action timeline for the remaining part of the funded project period
    • Discuss publication plans

Agenda

  • Review, discuss and finalize the processing workflow (to be discussed and documented by Andriy Fedorov and Ginger Li prior to the meeting Oct 7-8)
    • atlas construction
    • image pre-processing
    • registration
    • segmentation
  • Review currents results
  • Identify Slicer components of the workflow that are ... working, broken, missing

Attendance

Open to all interested parties:

  1. Chris Wyatt
  2. Ginger Li
  3. Ron Kikinis
  4. Sandy Wells
  5. Andriy Fedorov

References

TODO: link these

  • notes on the current workflow
  • registration results
  • newly available Slicer modules (registration, mask detection, bias correction)
  • atlas construction paper by Styner's group
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