Difference between revisions of "DBP:Harvard:Software:Minutes:11"

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''Agenda for 11-9-05 Meeting''
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''Agenda for 11-16-05 Meeting''
  
 
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# [[DBP:Harvard:Software:Testing:DTI:Slicer|Software Testing]], DTMRI module
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# [[DBP:Harvard:Software:Testing:DTI:Slicer|Software Testing]] (DTMRI scalar measures)
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#* Any updates for NRRD headers/caseD20? (Raul)
 
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#* Gordon: NRRD headers for recent EPI scan?
 
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#** Want to show images (from emails)?
 
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#** Also, want to discuss new scan parameters mentioned over emails?
 
 
# [[DBP:Harvard:Software:Bugs:Corpus_Callosum|Corpus Callosum Diffusion Measures]]
 
# [[DBP:Harvard:Software:Bugs:Corpus_Callosum|Corpus Callosum Diffusion Measures]]
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#* We are currently examining differences between old/new labelmaps, etc.
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#* still examining differences b/w old and new labelmaps, but we'll hold off until we find a reliable testing format (LSDIrecon vs. DTMRI)
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#* It does not appear to be a DICOM issue, but we will check.
 
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#* More details on this next week.
 
 
# [[DBP:Harvard:Software:Bugs:Corpus_Callosum_Fibers|Smoothing of Corpus Callosum Fibers ]]
 
# [[DBP:Harvard:Software:Bugs:Corpus_Callosum_Fibers|Smoothing of Corpus Callosum Fibers ]]
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#* Has anyone met about smoothing?
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#* waiting for Gordon...
 
# Lauren: Fiber clustering, backtracking to corpus labelmap?
 
# Lauren: Fiber clustering, backtracking to corpus labelmap?
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#* Appears to be available in Slicer, so we need to test it on a few cases.
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#* Clustering is SLOW
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#** Would it be better to test clustering on smoothed data?
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#* UNC FiberViewer is not much faster for clustering
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#* Limiting factor appears to be speed of clustering.
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#* Any suggestions?
 
# Cingulum Bundle Fiber Tracking
 
# Cingulum Bundle Fiber Tracking
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#* See examples of labelmaps [[DBP:Harvard:Software:Bugs:2ROI|here]].
 
 
#* We've been testing Raul's "2ROI" Module [[DBP:Harvard:Software:Bugs:Cingulum_Bundle_Fibers|here]].
 
#* We've been testing Raul's "2ROI" Module [[DBP:Harvard:Software:Bugs:Cingulum_Bundle_Fibers|here]].
  
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# FiberViewer testing: measure FA/trace along one fiber, and compare with Marc's Matlab scripts/output
 
 
# Mark & Sylvain, work on getting sagittal DTI onto NAMIC for UNC
 
# Mark & Sylvain, work on getting sagittal DTI onto NAMIC for UNC

Revision as of 14:02, 18 December 2006

Home < DBP:Harvard:Software:Minutes:11

Agenda for 11-16-05 Meeting


  1. Software Testing (DTMRI scalar measures)
  2. Corpus Callosum Diffusion Measures
    • still examining differences b/w old and new labelmaps, but we'll hold off until we find a reliable testing format (LSDIrecon vs. DTMRI)
  3. Smoothing of Corpus Callosum Fibers
    • waiting for Gordon...
  4. Lauren: Fiber clustering, backtracking to corpus labelmap?
    • Clustering is SLOW
    • UNC FiberViewer is not much faster for clustering
    • Any suggestions?
  5. Cingulum Bundle Fiber Tracking
    • We've been testing Raul's "2ROI" Module here.


TO DO THIS WEEK

  1. Mark & Sylvain, work on getting sagittal DTI onto NAMIC for UNC
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