Difference between revisions of "Projects:RegistrationDocumentation"
From NAMIC Wiki
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* Each entry will have one short description (that could also serve as tooltip) and one longer, more technical explanation. | * Each entry will have one short description (that could also serve as tooltip) and one longer, more technical explanation. | ||
*Preferred formats: Slicer Wiki, maybe PDF, cross-linking required | *Preferred formats: Slicer Wiki, maybe PDF, cross-linking required | ||
| − | *[[Projects:RegistrationDocumentation:ReferenceManual|Draft Registration Reference Manual]] | + | *'''[[Projects:RegistrationDocumentation:ReferenceManual|Draft Registration Reference Manual]]''' |
==User Manuals & Tutorials== | ==User Manuals & Tutorials== | ||
Revision as of 22:44, 10 November 2009
Home < Projects:RegistrationDocumentationContents
Use Case Library
- Registration Case Library
- Use Case Sharing Advertisment Page
- Notes & concepts about the Registration Case Library
Reference Manual
- The reference manual will contain detailed descriptions of each parameter and each control element within the slicer registration module. The description should help the user understand what exactly that function/parameter does and if/how useful it will be for their specific registration problem.
- Each entry will have one short description (that could also serve as tooltip) and one longer, more technical explanation.
- Preferred formats: Slicer Wiki, maybe PDF, cross-linking required
- Draft Registration Reference Manual
User Manuals & Tutorials
- The user manual will contain a systematic overview of registration functionality within 3DSlicer. formats: Slicer Wiki, PowerPoint.
- Turtorials will be case oriented and always demonstrate a particular task or feature
- Video Tutorials: showcase of specific workflow
- Background Tutorials, explaining the basics of registration, formats: PowerPoint. Minimal understanding of the inner workings of a registration optimization algorithm is essential to understand and judge the results obtained and obtainable.
- Topics for background tutorials:
- the main components: transform, similarity function, optimization, interpolation
- coordinate systems: physical vs. image space, RAS vs. LPI etc.
- relevant image meta-data: image/axis orientation, image/CS origin, voxel size, dynamic range
- overview of scenarios and their different challenges: image pairings, DOF, multi-modal, intra/inter-subject etc.
- how to evaluate a match: tools & concepts
- common mistakes to avoid: inappropriate DOF, overly flat similarity metric, CS inconsistencies, FOV discrepancies, wrong interpolation, insufficient search (sample points, multi-scale, DOF scale-space)
- Troubleshooting guide: insufficient match - what next? Parameter modification, DOF change, initial alignment assist, fiducial help, ROI masking (e.g. skull stripping)
- Tutorial Resources
- Coordinate Systems / Image Orientation
Development Efforts
- Notes & ideas for GUI and algorithm implementation. Discussion platform with the developer group
- Developer efforts (Kitware)
Links
- Registration Summit Aug'09
- Slicer Documentation 3.5
- Bug Tracker
- AHM_2010
- Slicer Logo & Communication Guide
- NAMIC registration:
- Contact: Dominik Meier : mailto:meier@bwh.harvard.edu
Bundled Registration and Tests
- http://www.na-mic.org/Wiki/index.php/Projects:DBP2:Harvard:Registration_Documentation
- http://www.na-mic.org/Wiki/index.php/MeningiomaMRIRegistrationStudy#Limitations_of_the_Slicer_registration_tools
- Vervet head MRI atlas-to-subject registration
- Head MRI registration between different timepoints (human subjects, changing pathology present)
- Side by side comparisons in slicer2 and slicer3 with data and images
- http://mindboggle.info/papers/index.php
- testing on the Vanderbuild database: RIRE
- ITK Registration Optimization Sets
