Projects:RegistrationDocumentation

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Use Case Library

• Registration Case Library
• Use Case Sharing Advertisment Page
• Notes & concepts about the Registration Case Library

Development Efforts

• Slicer4: Notes & feedbacl for GUI and algorithm implementation. Testing Summaries
• Slicer3: Notes & ideas for GUI and algorithm implementation. Discussion platform with the developer group
• Effects of Voxel Anisotropy and Intensity-Inhomogeneity on Image-Based 3D Registration
• Benchmarking
• Parameter Exploration
• Result Evaluation & Visualization
• Kitware Wiki on developer efforts

Reference Manual

• The reference manual will be organized by submodules and contain detailed descriptions of each parameter and each control element within the slicer registration module. The description should help the user understand what exactly that function/parameter does and if/how useful it will be for their specific registration problem.
• Each entry will have one short description (that could also serve as tooltip) and one longer, more technical explanation.
• links to journal articles for in depth algorithm info
• Preferred formats: Slicer Wiki, maybe PDF, cross-linking required
• Draft Registration Reference Manual

User Manuals & Tutorials

• Main Registration Portal Page
• Registration Basics, Registration Tools & User Support in Slicer (Powerpoint, 14MB)
• FAQ & Cookbooks
• The user manual will contain a systematic overview of registration functionality within 3DSlicer. formats: Slicer Wiki, PowerPoint.
  • Draft Registration User Manual
  • notes and documentation resources
• Tutorials will be case oriented and always demonstrate a particular task or feature
  • Video Tutorials: showcase of specific workflow
  • Background Tutorials, explaining the basics of registration, formats: PowerPoint. Minimal understanding of the inner workings of a registration optimization algorithm is essential to understand and judge the results obtained and obtainable.

Contact

• if there is anything you think would be of help to the 3DSlicer registration user, be that documentation, examples or features, we'd love to hear about it:
  • any questions/concerns are welcome on the slicer user mailing list: mailto:slicer-users@bwh.harvard.edu
  • particular questions/concerns re. these pages or Registration Documentation drop a line to mailto:meier@bwh.harvard.edu

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Links

• Data links
• huntington data

• Register Images Reference Material

• Registration Summit Aug'09
• 2009_Summer_Project_Week_Slicer3_registration
• Slicer Documentation 3.5
• Bug Tracker
• AHM_2010
• AHM 2010 Project Week: Registration Case Library Project Page
• Slicer Logo & Communication Guide
• NAMIC registration:
• Contact: Dominik Meier : mailto:meier@bwh.harvard.edu

Bundled Registration and Tests

• http://www.na-mic.org/Wiki/index.php/Projects:DBP2:Harvard:Registration_Documentation
• http://www.na-mic.org/Wiki/index.php/MeningiomaMRIRegistrationStudy#Limitations_of_the_Slicer_registration_tools
• Vervet head MRI atlas-to-subject registration
• Head MRI registration between different timepoints (human subjects, changing pathology present)
• Side by side comparisons in slicer2 and slicer3 with data and images
• http://mindboggle.info/papers/index.php
• testing on the Vanderbuild database: RIRE
• ITK Registration Optimization Sets
• DTI-non-rigid
• Projects:DBP2:Harvard:Registration_Documentation:Compare#Case_to_case_registration