Difference between revisions of "Import/Export Farsight-GoFigure results"
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==Key Investigators== | ==Key Investigators== | ||
* Harvard Medical School: Lydie Souhait, Arnaud Gelas, Sean Megason | * Harvard Medical School: Lydie Souhait, Arnaud Gelas, Sean Megason | ||
| − | * RPI: Badri Roysam | + | * RPI: Kedar Grama, Raghav Padmanabhan, Badri Roysam |
==Project== | ==Project== | ||
| Line 14: | Line 14: | ||
<h3>Objective</h3> | <h3>Objective</h3> | ||
| − | + | * Exchange data (cell segmentation results) between Farsight and Gofigure2 | |
</div> | </div> | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
| + | * Discuss current status of both projects | ||
| + | * Define common objects/traces used by both projects | ||
| + | * Install both projects | ||
| + | * Export the data from both projects into textfiles | ||
| + | * Import the data from Farsight into Gofigure Database | ||
| + | * Import the data from Gofigure Database into Farsight | ||
</div> | </div> | ||
| Line 24: | Line 30: | ||
<h3>Progress</h3> | <h3>Progress</h3> | ||
| − | + | * Export Contours/Meshes from Gofigure2 into textfile done | |
| + | * Import Contours/Meshes from textfile into Gofigure2 database done | ||
| + | * Import segmentation results from Farsight into Gofigurew done | ||
| + | * Import results from Gofigure2 into Farsight ~75% done | ||
</div> | </div> | ||
</div> | </div> | ||
| + | |||
| + | http://github.com/arnaudgelas/SegmentationToGoFigure2 | ||
| + | |||
<div style="width: 97%; float: left;"> | <div style="width: 97%; float: left;"> | ||
Latest revision as of 14:12, 25 June 2010
Home < Import < Export Farsight-GoFigure results
Key Investigators
- Harvard Medical School: Lydie Souhait, Arnaud Gelas, Sean Megason
- RPI: Kedar Grama, Raghav Padmanabhan, Badri Roysam
Project
Objective
- Exchange data (cell segmentation results) between Farsight and Gofigure2
Approach, Plan
- Discuss current status of both projects
- Define common objects/traces used by both projects
- Install both projects
- Export the data from both projects into textfiles
- Import the data from Farsight into Gofigure Database
- Import the data from Gofigure Database into Farsight
Progress
- Export Contours/Meshes from Gofigure2 into textfile done
- Import Contours/Meshes from textfile into Gofigure2 database done
- Import segmentation results from Farsight into Gofigurew done
- Import results from Gofigure2 into Farsight ~75% done
http://github.com/arnaudgelas/SegmentationToGoFigure2
